Protein–RNA interactions for Protein: P53668

Limk1, LIM domain kinase 1, mousemouse

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limk1P53668 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
Limk1P53668 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
Limk1P53668 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Limk1P53668 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC27.49■■□□□ 1.99
Limk1P53668 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC27.48■■□□□ 1.99
Limk1P53668 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Limk1P53668 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Limk1P53668 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Limk1P53668 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.38■■□□□ 1.97
Limk1P53668 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC27.34■■□□□ 1.97
Limk1P53668 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Limk1P53668 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Limk1P53668 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Limk1P53668 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Limk1P53668 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Limk1P53668 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC27.25■■□□□ 1.95
Limk1P53668 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
Limk1P53668 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Limk1P53668 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Limk1P53668 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC27.21■■□□□ 1.95
Limk1P53668 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
Limk1P53668 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
Limk1P53668 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC27.12■■□□□ 1.93
Limk1P53668 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Limk1P53668 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC27.1■■□□□ 1.93
Limk1P53668 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
Limk1P53668 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
Limk1P53668 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
Limk1P53668 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Limk1P53668 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC27.03■■□□□ 1.92
Limk1P53668 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Limk1P53668 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Limk1P53668 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Limk1P53668 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Limk1P53668 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Limk1P53668 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC26.88■■□□□ 1.89
Limk1P53668 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Limk1P53668 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Limk1P53668 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
Limk1P53668 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
Limk1P53668 AC166822.3-201ENSMUST00000227394 661 ntBASIC26.84■■□□□ 1.89
Limk1P53668 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Limk1P53668 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Limk1P53668 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
Limk1P53668 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Limk1P53668 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Limk1P53668 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
Limk1P53668 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.72■■□□□ 1.87
Limk1P53668 Tdp2-203ENSMUST00000223804 1136 ntBASIC26.7■■□□□ 1.86
Limk1P53668 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Limk1P53668 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Limk1P53668 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC26.64■■□□□ 1.85
Limk1P53668 Gm16148-201ENSMUST00000119653 893 ntBASIC26.62■■□□□ 1.85
Limk1P53668 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC26.62■■□□□ 1.85
Limk1P53668 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Limk1P53668 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Limk1P53668 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Limk1P53668 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Limk1P53668 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Limk1P53668 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Limk1P53668 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
Limk1P53668 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Limk1P53668 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.44■■□□□ 1.82
Limk1P53668 AL845457.1-201ENSMUST00000197244 68 ntBASIC26.44■■□□□ 1.82
Limk1P53668 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC26.43■■□□□ 1.82
Limk1P53668 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC26.39■■□□□ 1.82
Limk1P53668 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Limk1P53668 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Limk1P53668 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Limk1P53668 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC26.36■■□□□ 1.81
Limk1P53668 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC26.36■■□□□ 1.81
Limk1P53668 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Limk1P53668 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Limk1P53668 Gm42596-201ENSMUST00000196305 1958 ntBASIC26.33■■□□□ 1.8
Limk1P53668 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Limk1P53668 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Limk1P53668 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC26.32■■□□□ 1.8
Limk1P53668 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Limk1P53668 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Limk1P53668 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Limk1P53668 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.28■■□□□ 1.8
Limk1P53668 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Limk1P53668 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.26■■□□□ 1.79
Limk1P53668 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Limk1P53668 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Limk1P53668 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Limk1P53668 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26.25■■□□□ 1.79
Limk1P53668 Gm45855-201ENSMUST00000212546 880 ntBASIC26.24■■□□□ 1.79
Limk1P53668 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Limk1P53668 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Limk1P53668 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Limk1P53668 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
Limk1P53668 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.79
Limk1P53668 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC26.19■■□□□ 1.78
Limk1P53668 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Limk1P53668 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Limk1P53668 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Limk1P53668 Peli2-204ENSMUST00000226513 1320 ntBASIC26.14■■□□□ 1.78
Limk1P53668 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
Limk1P53668 Gm5987-201ENSMUST00000196433 1151 ntBASIC26.14■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms