Protein–RNA interactions for Protein: P43680

Sox18, Transcription factor SOX-18, mousemouse

Predictions only

Length 377 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox18P43680 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Sox18P43680 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC27.14■■□□□ 1.94
Sox18P43680 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC27.13■■□□□ 1.93
Sox18P43680 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC27.09■■□□□ 1.93
Sox18P43680 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Sox18P43680 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Sox18P43680 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.03■■□□□ 1.92
Sox18P43680 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC27.01■■□□□ 1.91
Sox18P43680 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Sox18P43680 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Sox18P43680 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Sox18P43680 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Sox18P43680 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Sox18P43680 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26.92■■□□□ 1.9
Sox18P43680 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Sox18P43680 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Sox18P43680 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Sox18P43680 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Sox18P43680 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC26.8■■□□□ 1.88
Sox18P43680 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.88
Sox18P43680 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.76■■□□□ 1.87
Sox18P43680 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC26.73■■□□□ 1.87
Sox18P43680 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Sox18P43680 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Sox18P43680 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Sox18P43680 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Sox18P43680 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Sox18P43680 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
Sox18P43680 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.85
Sox18P43680 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Sox18P43680 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Sox18P43680 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Sox18P43680 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC26.56■■□□□ 1.84
Sox18P43680 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Sox18P43680 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
Sox18P43680 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
Sox18P43680 AC166822.3-201ENSMUST00000227394 661 ntBASIC26.46■■□□□ 1.83
Sox18P43680 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Sox18P43680 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
Sox18P43680 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Sox18P43680 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.41■■□□□ 1.82
Sox18P43680 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Sox18P43680 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
Sox18P43680 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
Sox18P43680 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC26.34■■□□□ 1.81
Sox18P43680 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Sox18P43680 Tdp2-203ENSMUST00000223804 1136 ntBASIC26.32■■□□□ 1.8
Sox18P43680 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.32■■□□□ 1.8
Sox18P43680 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Sox18P43680 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Sox18P43680 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Sox18P43680 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Sox18P43680 Gm16148-201ENSMUST00000119653 893 ntBASIC26.27■■□□□ 1.8
Sox18P43680 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Sox18P43680 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Sox18P43680 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
Sox18P43680 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Sox18P43680 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Sox18P43680 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Sox18P43680 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Sox18P43680 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
Sox18P43680 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
Sox18P43680 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
Sox18P43680 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Sox18P43680 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Sox18P43680 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
Sox18P43680 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC26.11■■□□□ 1.77
Sox18P43680 AL845457.1-201ENSMUST00000197244 68 ntBASIC26.09■■□□□ 1.77
Sox18P43680 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Sox18P43680 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
Sox18P43680 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC26.03■■□□□ 1.76
Sox18P43680 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
Sox18P43680 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Sox18P43680 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Sox18P43680 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC25.98■■□□□ 1.75
Sox18P43680 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Sox18P43680 Gm45855-201ENSMUST00000212546 880 ntBASIC25.94■■□□□ 1.74
Sox18P43680 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Sox18P43680 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Sox18P43680 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC25.93■■□□□ 1.74
Sox18P43680 Gm42596-201ENSMUST00000196305 1958 ntBASIC25.91■■□□□ 1.74
Sox18P43680 Gm5987-201ENSMUST00000196433 1151 ntBASIC25.91■■□□□ 1.74
Sox18P43680 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
Sox18P43680 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.89■■□□□ 1.74
Sox18P43680 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Sox18P43680 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Sox18P43680 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Sox18P43680 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
Sox18P43680 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC25.85■■□□□ 1.73
Sox18P43680 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
Sox18P43680 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Sox18P43680 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
Sox18P43680 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Sox18P43680 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
Sox18P43680 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Sox18P43680 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Sox18P43680 Peli2-204ENSMUST00000226513 1320 ntBASIC25.78■■□□□ 1.72
Sox18P43680 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Sox18P43680 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Sox18P43680 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC25.74■■□□□ 1.71
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms