Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
HttP42859 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
HttP42859 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.53■■■□□ 2.64
HttP42859 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
HttP42859 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.51■■■□□ 2.64
HttP42859 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
HttP42859 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
HttP42859 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
HttP42859 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.34■■■□□ 2.61
HttP42859 Psd-208ENSMUST00000224556 2034 ntBASIC31.34■■■□□ 2.61
HttP42859 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.33■■■□□ 2.61
HttP42859 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
HttP42859 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC31.27■■■□□ 2.6
HttP42859 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
HttP42859 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
HttP42859 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
HttP42859 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
HttP42859 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC31.22■■■□□ 2.59
HttP42859 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
HttP42859 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
HttP42859 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
HttP42859 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC31.06■■■□□ 2.56
HttP42859 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
HttP42859 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
HttP42859 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
HttP42859 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
HttP42859 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC30.99■■■□□ 2.55
HttP42859 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC30.93■■■□□ 2.54
HttP42859 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
HttP42859 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
HttP42859 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
HttP42859 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC30.88■■■□□ 2.53
HttP42859 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
HttP42859 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.78■■■□□ 2.52
HttP42859 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
HttP42859 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
HttP42859 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC30.72■■■□□ 2.51
HttP42859 Tdp2-203ENSMUST00000223804 1136 ntBASIC30.71■■■□□ 2.51
HttP42859 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
HttP42859 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
HttP42859 Gm5987-201ENSMUST00000196433 1151 ntBASIC30.7■■■□□ 2.5
HttP42859 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
HttP42859 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
HttP42859 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
HttP42859 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
HttP42859 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC30.63■■■□□ 2.49
HttP42859 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC30.63■■■□□ 2.49
HttP42859 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC30.62■■■□□ 2.49
HttP42859 Gm16148-201ENSMUST00000119653 893 ntBASIC30.62■■■□□ 2.49
HttP42859 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
HttP42859 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
HttP42859 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
HttP42859 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
HttP42859 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
HttP42859 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
HttP42859 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
HttP42859 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
HttP42859 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
HttP42859 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC30.49■■■□□ 2.47
HttP42859 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
HttP42859 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
HttP42859 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
HttP42859 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
HttP42859 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.47
HttP42859 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
HttP42859 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC30.38■■■□□ 2.45
HttP42859 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
HttP42859 Gm42596-201ENSMUST00000196305 1958 ntBASIC30.37■■■□□ 2.45
HttP42859 Gm45855-201ENSMUST00000212546 880 ntBASIC30.36■■■□□ 2.45
HttP42859 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
HttP42859 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC30.35■■■□□ 2.45
HttP42859 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC30.35■■■□□ 2.45
HttP42859 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.34■■■□□ 2.45
HttP42859 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
HttP42859 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
HttP42859 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
HttP42859 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
HttP42859 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC30.24■■■□□ 2.43
HttP42859 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
HttP42859 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
HttP42859 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
HttP42859 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30.21■■■□□ 2.43
HttP42859 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
HttP42859 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
HttP42859 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.19■■■□□ 2.42
HttP42859 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
HttP42859 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
HttP42859 AL845457.1-201ENSMUST00000197244 68 ntBASIC30.15■■■□□ 2.42
HttP42859 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
HttP42859 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
HttP42859 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC30.1■■■□□ 2.41
HttP42859 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
HttP42859 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
HttP42859 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
HttP42859 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC30.05■■■□□ 2.4
HttP42859 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC30.05■■■□□ 2.4
HttP42859 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
HttP42859 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
HttP42859 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC30■■■□□ 2.39
HttP42859 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms