Protein–RNA interactions for Protein: O70209

Pdlim3, PDZ and LIM domain protein 3, mousemouse

Known RBP Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim3O70209 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
Pdlim3O70209 Gm27325-201ENSMUST00000175467 74 ntBASIC24.82■■□□□ 1.56
Pdlim3O70209 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC24.8■■□□□ 1.56
Pdlim3O70209 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Pdlim3O70209 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
Pdlim3O70209 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pdlim3O70209 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Pdlim3O70209 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Pdlim3O70209 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC24.59■■□□□ 1.53
Pdlim3O70209 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Pdlim3O70209 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.52
Pdlim3O70209 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC24.58■■□□□ 1.52
Pdlim3O70209 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC24.56■■□□□ 1.52
Pdlim3O70209 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Pdlim3O70209 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Pdlim3O70209 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
Pdlim3O70209 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Pdlim3O70209 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Pdlim3O70209 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Pdlim3O70209 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Pdlim3O70209 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
Pdlim3O70209 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.45■■□□□ 1.51
Pdlim3O70209 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC24.4■■□□□ 1.5
Pdlim3O70209 Gm25238-201ENSMUST00000174914 89 ntBASIC24.39■■□□□ 1.49
Pdlim3O70209 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24.39■■□□□ 1.49
Pdlim3O70209 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Pdlim3O70209 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Pdlim3O70209 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Pdlim3O70209 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Pdlim3O70209 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Pdlim3O70209 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Pdlim3O70209 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Pdlim3O70209 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Pdlim3O70209 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC24.27■■□□□ 1.48
Pdlim3O70209 Zfp131-207ENSMUST00000224946 1783 ntBASIC24.24■■□□□ 1.47
Pdlim3O70209 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.24■■□□□ 1.47
Pdlim3O70209 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Pdlim3O70209 Gm2415-204ENSMUST00000190235 2004 ntBASIC24.22■■□□□ 1.47
Pdlim3O70209 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.21■■□□□ 1.47
Pdlim3O70209 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Pdlim3O70209 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Pdlim3O70209 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
Pdlim3O70209 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
Pdlim3O70209 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC24.15■■□□□ 1.46
Pdlim3O70209 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC24.15■■□□□ 1.46
Pdlim3O70209 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Pdlim3O70209 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Pdlim3O70209 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Pdlim3O70209 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Pdlim3O70209 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Pdlim3O70209 AC153504.1-201ENSMUST00000218379 2290 ntBASIC24.08■■□□□ 1.44
Pdlim3O70209 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC24.06■■□□□ 1.44
Pdlim3O70209 Gm6658-202ENSMUST00000209493 1885 ntBASIC24.04■■□□□ 1.44
Pdlim3O70209 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Pdlim3O70209 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24■■□□□ 1.43
Pdlim3O70209 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Pdlim3O70209 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC23.96■■□□□ 1.43
Pdlim3O70209 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
Pdlim3O70209 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Pdlim3O70209 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
Pdlim3O70209 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Pdlim3O70209 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Pdlim3O70209 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Pdlim3O70209 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Pdlim3O70209 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Pdlim3O70209 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Pdlim3O70209 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Pdlim3O70209 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Pdlim3O70209 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Pdlim3O70209 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Pdlim3O70209 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC23.84■■□□□ 1.41
Pdlim3O70209 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC23.81■■□□□ 1.4
Pdlim3O70209 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Pdlim3O70209 Rab21-202ENSMUST00000218831 843 ntBASIC23.81■■□□□ 1.4
Pdlim3O70209 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Pdlim3O70209 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC23.8■■□□□ 1.4
Pdlim3O70209 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.8■■□□□ 1.4
Pdlim3O70209 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Pdlim3O70209 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.76■■□□□ 1.39
Pdlim3O70209 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Pdlim3O70209 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC23.75■■□□□ 1.39
Pdlim3O70209 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Pdlim3O70209 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Pdlim3O70209 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
Pdlim3O70209 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Pdlim3O70209 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Pdlim3O70209 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
Pdlim3O70209 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Pdlim3O70209 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Pdlim3O70209 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Pdlim3O70209 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Pdlim3O70209 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
Pdlim3O70209 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
Pdlim3O70209 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Pdlim3O70209 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Pdlim3O70209 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
Pdlim3O70209 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC23.61■■□□□ 1.37
Pdlim3O70209 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Pdlim3O70209 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Pdlim3O70209 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms