Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32.73■■■□□ 2.83
Smarce1O54941 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.71■■■□□ 2.83
Smarce1O54941 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Smarce1O54941 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC32.64■■■□□ 2.82
Smarce1O54941 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC32.61■■■□□ 2.81
Smarce1O54941 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.6■■■□□ 2.81
Smarce1O54941 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC32.56■■■□□ 2.8
Smarce1O54941 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC32.51■■■□□ 2.79
Smarce1O54941 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Smarce1O54941 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Smarce1O54941 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
Smarce1O54941 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
Smarce1O54941 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC32.35■■■□□ 2.77
Smarce1O54941 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Smarce1O54941 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC32.33■■■□□ 2.77
Smarce1O54941 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.32■■■□□ 2.76
Smarce1O54941 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Smarce1O54941 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
Smarce1O54941 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Smarce1O54941 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC32.24■■■□□ 2.75
Smarce1O54941 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.22■■■□□ 2.75
Smarce1O54941 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Smarce1O54941 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Smarce1O54941 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Smarce1O54941 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
Smarce1O54941 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC32.16■■■□□ 2.74
Smarce1O54941 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC32.08■■■□□ 2.73
Smarce1O54941 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.07■■■□□ 2.72
Smarce1O54941 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
Smarce1O54941 Zfp131-207ENSMUST00000224946 1783 ntBASIC32.03■■■□□ 2.72
Smarce1O54941 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC32.02■■■□□ 2.72
Smarce1O54941 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
Smarce1O54941 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Smarce1O54941 Rab21-202ENSMUST00000218831 843 ntBASIC31.96■■■□□ 2.71
Smarce1O54941 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
Smarce1O54941 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Smarce1O54941 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
Smarce1O54941 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC31.88■■■□□ 2.69
Smarce1O54941 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Smarce1O54941 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
Smarce1O54941 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Smarce1O54941 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
Smarce1O54941 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Smarce1O54941 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.77■■■□□ 2.68
Smarce1O54941 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.76■■■□□ 2.67
Smarce1O54941 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
Smarce1O54941 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.74■■■□□ 2.67
Smarce1O54941 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Smarce1O54941 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Smarce1O54941 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Smarce1O54941 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
Smarce1O54941 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.72■■■□□ 2.67
Smarce1O54941 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Smarce1O54941 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Smarce1O54941 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.64■■■□□ 2.65
Smarce1O54941 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
Smarce1O54941 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.63■■■□□ 2.65
Smarce1O54941 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
Smarce1O54941 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Smarce1O54941 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Smarce1O54941 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Smarce1O54941 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Smarce1O54941 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Smarce1O54941 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
Smarce1O54941 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Smarce1O54941 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Smarce1O54941 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Smarce1O54941 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
Smarce1O54941 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Smarce1O54941 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Smarce1O54941 Gm6658-202ENSMUST00000209493 1885 ntBASIC31.44■■■□□ 2.62
Smarce1O54941 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Smarce1O54941 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.4■■■□□ 2.62
Smarce1O54941 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC31.37■■■□□ 2.61
Smarce1O54941 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC31.36■■■□□ 2.61
Smarce1O54941 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC31.35■■■□□ 2.61
Smarce1O54941 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Smarce1O54941 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Smarce1O54941 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Smarce1O54941 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Smarce1O54941 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Smarce1O54941 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
Smarce1O54941 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Smarce1O54941 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Smarce1O54941 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Smarce1O54941 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
Smarce1O54941 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Smarce1O54941 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
Smarce1O54941 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
Smarce1O54941 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
Smarce1O54941 AC153504.1-201ENSMUST00000218379 2290 ntBASIC31.17■■■□□ 2.58
Smarce1O54941 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Smarce1O54941 AL845457.1-201ENSMUST00000197244 68 ntBASIC31.14■■■□□ 2.58
Smarce1O54941 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC31.14■■■□□ 2.57
Smarce1O54941 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
Smarce1O54941 Mipep-204ENSMUST00000225043 1548 ntBASIC31.07■■■□□ 2.56
Smarce1O54941 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
Smarce1O54941 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
Smarce1O54941 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Smarce1O54941 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
Retrieved 100 of 76,532 protein–RNA pairs in 13.9 ms