Protein–RNA interactions for Protein: E9Q2N0

Cpsf4l, Cleavage and polyadenylation-specific factor 4-like, mousemouse

Predictions only

Length 280 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4lE9Q2N0 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC23.69■■□□□ 1.38
Cpsf4lE9Q2N0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Cpsf4lE9Q2N0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Cpsf4lE9Q2N0 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Cpsf4lE9Q2N0 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Cpsf4lE9Q2N0 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Cpsf4lE9Q2N0 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Cpsf4lE9Q2N0 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23.57■■□□□ 1.36
Cpsf4lE9Q2N0 Gm25262-201ENSMUST00000174934 133 ntBASIC23.57■■□□□ 1.36
Cpsf4lE9Q2N0 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Cpsf4lE9Q2N0 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Cpsf4lE9Q2N0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Cpsf4lE9Q2N0 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Cpsf4lE9Q2N0 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Cpsf4lE9Q2N0 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.46■■□□□ 1.35
Cpsf4lE9Q2N0 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.44■■□□□ 1.34
Cpsf4lE9Q2N0 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Cpsf4lE9Q2N0 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Cpsf4lE9Q2N0 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Cpsf4lE9Q2N0 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
Cpsf4lE9Q2N0 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Cpsf4lE9Q2N0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Cpsf4lE9Q2N0 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cpsf4lE9Q2N0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cpsf4lE9Q2N0 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Cpsf4lE9Q2N0 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Cpsf4lE9Q2N0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cpsf4lE9Q2N0 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC23.26■■□□□ 1.31
Cpsf4lE9Q2N0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Cpsf4lE9Q2N0 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cpsf4lE9Q2N0 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf4lE9Q2N0 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC23.21■■□□□ 1.31
Cpsf4lE9Q2N0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf4lE9Q2N0 Zfp131-207ENSMUST00000224946 1783 ntBASIC23.18■■□□□ 1.3
Cpsf4lE9Q2N0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cpsf4lE9Q2N0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Cpsf4lE9Q2N0 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
Cpsf4lE9Q2N0 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC23.13■■□□□ 1.29
Cpsf4lE9Q2N0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Cpsf4lE9Q2N0 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cpsf4lE9Q2N0 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC23.07■■□□□ 1.28
Cpsf4lE9Q2N0 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Cpsf4lE9Q2N0 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC23.03■■□□□ 1.28
Cpsf4lE9Q2N0 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC23.03■■□□□ 1.28
Cpsf4lE9Q2N0 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Cpsf4lE9Q2N0 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Cpsf4lE9Q2N0 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Cpsf4lE9Q2N0 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Cpsf4lE9Q2N0 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Cpsf4lE9Q2N0 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
Cpsf4lE9Q2N0 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Cpsf4lE9Q2N0 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Cpsf4lE9Q2N0 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Cpsf4lE9Q2N0 Gm17082-201ENSMUST00000166043 1091 ntBASIC22.88■■□□□ 1.25
Cpsf4lE9Q2N0 AL845457.1-201ENSMUST00000197244 68 ntBASIC22.88■■□□□ 1.25
Cpsf4lE9Q2N0 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Cpsf4lE9Q2N0 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Cpsf4lE9Q2N0 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Cpsf4lE9Q2N0 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Cpsf4lE9Q2N0 Gm26115-201ENSMUST00000175605 87 ntBASIC22.82■■□□□ 1.24
Cpsf4lE9Q2N0 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf4lE9Q2N0 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Cpsf4lE9Q2N0 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Cpsf4lE9Q2N0 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
Cpsf4lE9Q2N0 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cpsf4lE9Q2N0 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
Cpsf4lE9Q2N0 Gm8109-201ENSMUST00000194076 746 ntBASIC22.78■■□□□ 1.24
Cpsf4lE9Q2N0 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cpsf4lE9Q2N0 Gm27322-201ENSMUST00000184007 104 ntBASIC22.77■■□□□ 1.24
Cpsf4lE9Q2N0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC22.77■■□□□ 1.24
Cpsf4lE9Q2N0 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Cpsf4lE9Q2N0 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
Cpsf4lE9Q2N0 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Cpsf4lE9Q2N0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
Cpsf4lE9Q2N0 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC22.74■■□□□ 1.23
Cpsf4lE9Q2N0 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC22.74■■□□□ 1.23
Cpsf4lE9Q2N0 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
Cpsf4lE9Q2N0 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cpsf4lE9Q2N0 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Cpsf4lE9Q2N0 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC22.62■■□□□ 1.21
Cpsf4lE9Q2N0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf4lE9Q2N0 Mipep-204ENSMUST00000225043 1548 ntBASIC22.61■■□□□ 1.21
Cpsf4lE9Q2N0 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cpsf4lE9Q2N0 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.57■■□□□ 1.2
Cpsf4lE9Q2N0 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Cpsf4lE9Q2N0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Cpsf4lE9Q2N0 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Cpsf4lE9Q2N0 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Cpsf4lE9Q2N0 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Cpsf4lE9Q2N0 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Cpsf4lE9Q2N0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf4lE9Q2N0 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf4lE9Q2N0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22.47■■□□□ 1.19
Cpsf4lE9Q2N0 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Cpsf4lE9Q2N0 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC22.44■■□□□ 1.18
Cpsf4lE9Q2N0 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC22.43■■□□□ 1.18
Cpsf4lE9Q2N0 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Cpsf4lE9Q2N0 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
Cpsf4lE9Q2N0 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Cpsf4lE9Q2N0 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms