Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC27.83■■■□□ 2.05
Chd3B1AR17 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC27.79■■■□□ 2.04
Chd3B1AR17 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Chd3B1AR17 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Chd3B1AR17 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Chd3B1AR17 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Chd3B1AR17 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
Chd3B1AR17 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Chd3B1AR17 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
Chd3B1AR17 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Chd3B1AR17 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC27.62■■■□□ 2.01
Chd3B1AR17 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC27.61■■■□□ 2.01
Chd3B1AR17 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Chd3B1AR17 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC27.59■■■□□ 2.01
Chd3B1AR17 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
Chd3B1AR17 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Chd3B1AR17 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Chd3B1AR17 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC27.53■■■□□ 2
Chd3B1AR17 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC27.52■■■□□ 2
Chd3B1AR17 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC27.51■■□□□ 1.99
Chd3B1AR17 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
Chd3B1AR17 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC27.48■■□□□ 1.99
Chd3B1AR17 Gm17082-201ENSMUST00000166043 1091 ntBASIC27.47■■□□□ 1.99
Chd3B1AR17 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.47■■□□□ 1.99
Chd3B1AR17 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Chd3B1AR17 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Chd3B1AR17 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
Chd3B1AR17 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Chd3B1AR17 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Chd3B1AR17 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Chd3B1AR17 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Chd3B1AR17 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
Chd3B1AR17 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC27.24■■□□□ 1.95
Chd3B1AR17 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
Chd3B1AR17 Zfp131-207ENSMUST00000224946 1783 ntBASIC27.21■■□□□ 1.95
Chd3B1AR17 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC27.2■■□□□ 1.94
Chd3B1AR17 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
Chd3B1AR17 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC27.16■■□□□ 1.94
Chd3B1AR17 Gm27322-201ENSMUST00000184007 104 ntBASIC27.16■■□□□ 1.94
Chd3B1AR17 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Chd3B1AR17 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Chd3B1AR17 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Chd3B1AR17 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Chd3B1AR17 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Chd3B1AR17 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Chd3B1AR17 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Chd3B1AR17 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Chd3B1AR17 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC26.98■■□□□ 1.91
Chd3B1AR17 AL845457.1-201ENSMUST00000197244 68 ntBASIC26.97■■□□□ 1.91
Chd3B1AR17 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Chd3B1AR17 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.92■■□□□ 1.9
Chd3B1AR17 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Chd3B1AR17 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC26.91■■□□□ 1.9
Chd3B1AR17 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Chd3B1AR17 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Chd3B1AR17 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC26.9■■□□□ 1.9
Chd3B1AR17 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Chd3B1AR17 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Chd3B1AR17 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Chd3B1AR17 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Chd3B1AR17 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
Chd3B1AR17 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Chd3B1AR17 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
Chd3B1AR17 Gm24804-201ENSMUST00000174982 85 ntBASIC26.77■■□□□ 1.88
Chd3B1AR17 AC166822.3-201ENSMUST00000227394 661 ntBASIC26.77■■□□□ 1.88
Chd3B1AR17 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Chd3B1AR17 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Chd3B1AR17 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Chd3B1AR17 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Chd3B1AR17 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Chd3B1AR17 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Chd3B1AR17 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Chd3B1AR17 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Chd3B1AR17 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Chd3B1AR17 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26.51■■□□□ 1.83
Chd3B1AR17 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
Chd3B1AR17 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Chd3B1AR17 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Chd3B1AR17 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Chd3B1AR17 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Chd3B1AR17 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Chd3B1AR17 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Chd3B1AR17 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Chd3B1AR17 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.82
Chd3B1AR17 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Chd3B1AR17 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Chd3B1AR17 Mipep-204ENSMUST00000225043 1548 ntBASIC26.42■■□□□ 1.82
Chd3B1AR17 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Chd3B1AR17 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
Chd3B1AR17 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
Chd3B1AR17 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
Chd3B1AR17 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Chd3B1AR17 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Chd3B1AR17 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Chd3B1AR17 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Chd3B1AR17 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Chd3B1AR17 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC26.32■■□□□ 1.8
Chd3B1AR17 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Chd3B1AR17 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Chd3B1AR17 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms