Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Gm38577-201ENSMUST00000221531 4545 ntBASIC13.62□□□□□ -0.23
Clp1Q99LI9 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Clp1Q99LI9 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Mir1943-201ENSMUST00000158276 73 ntBASIC13.61□□□□□ -0.23
Clp1Q99LI9 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Gm32999-201ENSMUST00000192693 562 ntBASIC13.61□□□□□ -0.23
Clp1Q99LI9 2900076G11Rik-201ENSMUST00000202297 631 ntBASIC13.61□□□□□ -0.23
Clp1Q99LI9 Aprt-ps-201ENSMUST00000212311 505 ntBASIC13.61□□□□□ -0.23
Clp1Q99LI9 AC166344.1-202ENSMUST00000224139 234 ntBASIC13.61□□□□□ -0.23
Clp1Q99LI9 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Clp1Q99LI9 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Gm14999-201ENSMUST00000121039 624 ntBASIC13.6□□□□□ -0.23
Clp1Q99LI9 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Clp1Q99LI9 Gm5070-201ENSMUST00000177599 862 ntBASIC13.6□□□□□ -0.23
Clp1Q99LI9 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms