Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLRN1P58418 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN1P58418 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN1P58418 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.34□□□□□ -0.11
CLRN1P58418 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CLRN1P58418 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.34□□□□□ -0.11
CLRN1P58418 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN1P58418 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.34□□□□□ -0.11
CLRN1P58418 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN1P58418 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN1P58418 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CLRN1P58418 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.34□□□□□ -0.11
CLRN1P58418 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLRN1P58418 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLRN1P58418 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLRN1P58418 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLRN1P58418 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLRN1P58418 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLRN1P58418 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.33□□□□□ -0.12
CLRN1P58418 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
CLRN1P58418 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 CICP6-201ENST00000457191 2729 ntBASIC14.33□□□□□ -0.12
CLRN1P58418 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC14.33□□□□□ -0.12
CLRN1P58418 KRT18P32-201ENST00000424695 1287 ntBASIC14.33□□□□□ -0.12
CLRN1P58418 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.33□□□□□ -0.12
CLRN1P58418 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.33□□□□□ -0.12
CLRN1P58418 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.33□□□□□ -0.12
CLRN1P58418 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLRN1P58418 AC022145.2-201ENST00000598203 171 ntBASIC14.33□□□□□ -0.12
CLRN1P58418 AC055717.3-201ENST00000622967 595 ntBASIC14.33□□□□□ -0.12
CLRN1P58418 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.33□□□□□ -0.12
CLRN1P58418 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CLRN1P58418 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.33□□□□□ -0.12
CLRN1P58418 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN1P58418 AC134407.2-201ENST00000625089 1978 ntBASIC14.33□□□□□ -0.12
CLRN1P58418 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN1P58418 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
CLRN1P58418 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN1P58418 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
CLRN1P58418 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.32□□□□□ -0.12
CLRN1P58418 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN1P58418 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CLRN1P58418 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLRN1P58418 UPF3AP3-201ENST00000420996 769 ntBASIC14.32□□□□□ -0.12
CLRN1P58418 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN1P58418 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 AC112482.1-201ENST00000492080 688 ntBASIC14.32□□□□□ -0.12
CLRN1P58418 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
CLRN1P58418 YBX1P5-201ENST00000509441 847 ntBASIC14.32□□□□□ -0.12
CLRN1P58418 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.32□□□□□ -0.12
CLRN1P58418 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN1P58418 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN1P58418 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN1P58418 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN1P58418 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.32□□□□□ -0.12
CLRN1P58418 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.32□□□□□ -0.12
CLRN1P58418 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
CLRN1P58418 AC011477.6-201ENST00000604980 1927 ntBASIC14.32□□□□□ -0.12
CLRN1P58418 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN1P58418 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
CLRN1P58418 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN1P58418 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLRN1P58418 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLRN1P58418 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN1P58418 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CLRN1P58418 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN1P58418 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms