Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.06■□□□□ 0
COL5A1P20908 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.06■□□□□ 0
COL5A1P20908 AP005019.2-201ENST00000615104 511 ntBASIC15.06■□□□□ 0
COL5A1P20908 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
COL5A1P20908 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
COL5A1P20908 AC006449.5-201ENST00000610658 2098 ntBASIC15.06■□□□□ 0
COL5A1P20908 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC15.06■□□□□ 0
COL5A1P20908 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.06■□□□□ 0
COL5A1P20908 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.06■□□□□ 0
COL5A1P20908 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 SLC25A24P2-201ENST00000415059 510 ntBASIC15.06■□□□□ 0
COL5A1P20908 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 HSPB1P2-201ENST00000448722 546 ntBASIC15.06■□□□□ 0
COL5A1P20908 HOMER2P2-201ENST00000451621 847 ntBASIC15.06■□□□□ 0
COL5A1P20908 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.06■□□□□ 0
COL5A1P20908 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.06■□□□□ 0
COL5A1P20908 AP001258.2-201ENST00000529891 490 ntBASIC15.06■□□□□ 0
COL5A1P20908 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC15.06■□□□□ 0
COL5A1P20908 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
COL5A1P20908 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL5A1P20908 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.05■□□□□ 0
COL5A1P20908 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
COL5A1P20908 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
COL5A1P20908 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL5A1P20908 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
COL5A1P20908 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL5A1P20908 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL5A1P20908 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL5A1P20908 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
COL5A1P20908 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ 0
COL5A1P20908 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
COL5A1P20908 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 PCDHB19P-201ENST00000570871 2371 ntBASIC15.05■□□□□ -0
COL5A1P20908 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.05■□□□□ -0
COL5A1P20908 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
COL5A1P20908 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
COL5A1P20908 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
COL5A1P20908 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
COL5A1P20908 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 RN7SL190P-201ENST00000582519 257 ntBASIC15.05■□□□□ -0
COL5A1P20908 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL5A1P20908 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.05■□□□□ -0
COL5A1P20908 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
COL5A1P20908 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
COL5A1P20908 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.04■□□□□ -0
COL5A1P20908 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.04■□□□□ -0
COL5A1P20908 FAM197Y7-201ENST00000432892 766 ntBASIC15.04■□□□□ -0
COL5A1P20908 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.04■□□□□ -0
COL5A1P20908 RPSAP36-202ENST00000494591 1261 ntBASIC15.04■□□□□ -0
COL5A1P20908 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.04■□□□□ -0
COL5A1P20908 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
COL5A1P20908 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.04■□□□□ -0
COL5A1P20908 AC132938.4-201ENST00000623835 848 ntBASIC15.04■□□□□ -0
COL5A1P20908 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.04■□□□□ -0
COL5A1P20908 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.04■□□□□ -0
COL5A1P20908 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.04■□□□□ -0
COL5A1P20908 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL5A1P20908 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms