Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 AC138627.1-207ENST00000641560 1006 ntBASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 RNU1-114P-201ENST00000365297 166 ntBASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 HSPB1P2-201ENST00000448722 546 ntBASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 HNRNPUP1-201ENST00000554987 333 ntBASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 AC009053.2-201ENST00000563701 2365 ntBASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC88AQ3V6T2 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 FTLP1-201ENST00000449155 526 ntBASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 IMP3P2-201ENST00000489760 475 ntBASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 AC020914.3-201ENST00000594712 304 ntBASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC88AQ3V6T2 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 AP001282.1-201ENST00000531301 1499 ntBASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 AC018735.1-201ENST00000437208 1502 ntBASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 RPSAP36-202ENST00000494591 1261 ntBASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 MIR4741-201ENST00000579822 90 ntBASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 RN7SL574P-201ENST00000581512 297 ntBASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 AGER-206ENST00000375070 1463 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CCDC88AQ3V6T2 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC88AQ3V6T2 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC88AQ3V6T2 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC88AQ3V6T2 BNIP3P1-202ENST00000550043 1585 ntBASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms