Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL5A3P25940 AC092171.3-201ENST00000610122 2651 ntBASIC19.78■□□□□ 0.76
COL5A3P25940 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.78■□□□□ 0.76
COL5A3P25940 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.78■□□□□ 0.76
COL5A3P25940 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL5A3P25940 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL5A3P25940 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.78■□□□□ 0.76
COL5A3P25940 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC19.78■□□□□ 0.76
COL5A3P25940 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC19.78■□□□□ 0.76
COL5A3P25940 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
COL5A3P25940 AC132938.4-201ENST00000623835 848 ntBASIC19.78■□□□□ 0.76
COL5A3P25940 AC138627.1-207ENST00000641560 1006 ntBASIC19.78■□□□□ 0.76
COL5A3P25940 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL5A3P25940 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.78■□□□□ 0.76
COL5A3P25940 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A3P25940 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL5A3P25940 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
COL5A3P25940 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC19.77■□□□□ 0.76
COL5A3P25940 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.77■□□□□ 0.76
COL5A3P25940 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
COL5A3P25940 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.77■□□□□ 0.76
COL5A3P25940 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC19.77■□□□□ 0.76
COL5A3P25940 ETV2-208ENST00000621247 941 ntTSL 5 BASIC19.77■□□□□ 0.76
COL5A3P25940 AC091812.3-201ENST00000621362 345 ntBASIC19.77■□□□□ 0.76
COL5A3P25940 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
COL5A3P25940 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.77■□□□□ 0.76
COL5A3P25940 AL138799.1-201ENST00000448213 1675 ntBASIC19.77■□□□□ 0.76
COL5A3P25940 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC19.77■□□□□ 0.76
COL5A3P25940 MTHFR-217ENST00000641820 1569 ntBASIC19.77■□□□□ 0.76
COL5A3P25940 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
COL5A3P25940 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A3P25940 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC19.77■□□□□ 0.76
COL5A3P25940 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL5A3P25940 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL5A3P25940 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.77■□□□□ 0.75
COL5A3P25940 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.76■□□□□ 0.75
COL5A3P25940 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC19.76■□□□□ 0.75
COL5A3P25940 ELK2AP-201ENST00000392510 1007 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 AL354877.1-201ENST00000424412 413 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 POM121L10P-201ENST00000436994 1285 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
COL5A3P25940 AC044849.1-201ENST00000519737 1188 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 AC016629.1-201ENST00000596579 586 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 AC138649.2-201ENST00000615886 705 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC19.76■□□□□ 0.75
COL5A3P25940 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
COL5A3P25940 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
COL5A3P25940 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.76■□□□□ 0.75
COL5A3P25940 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.76■□□□□ 0.75
COL5A3P25940 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
COL5A3P25940 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 AC015818.8-201ENST00000587907 1519 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 KRT8P14-201ENST00000414254 1442 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.76■□□□□ 0.75
COL5A3P25940 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
COL5A3P25940 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A3P25940 MPV17-205ENST00000402310 906 ntTSL 5 BASIC19.76■□□□□ 0.75
COL5A3P25940 AC005077.2-201ENST00000449786 690 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 UPF3AP2-201ENST00000457924 1132 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 SERPINA13P-202ENST00000478994 924 ntBASIC19.76■□□□□ 0.75
COL5A3P25940 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.76■□□□□ 0.75
COL5A3P25940 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.75■□□□□ 0.75
COL5A3P25940 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL5A3P25940 MFF-204ENST00000353339 2186 ntTSL 5 BASIC19.75■□□□□ 0.75
COL5A3P25940 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A3P25940 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A3P25940 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A3P25940 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC19.75■□□□□ 0.75
COL5A3P25940 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
COL5A3P25940 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC19.75■□□□□ 0.75
COL5A3P25940 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms