Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Lire1P11260 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
Lire1P11260 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Lire1P11260 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lire1P11260 Gm5859-201ENSMUST00000165401 2324 ntBASIC12.44□□□□□ -0.42
Lire1P11260 CT009713.5-203ENSMUST00000224218 2079 ntBASIC12.44□□□□□ -0.42
Lire1P11260 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Lire1P11260 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Lire1P11260 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC12.44□□□□□ -0.42
Lire1P11260 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
Lire1P11260 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.44□□□□□ -0.42
Lire1P11260 Mir1938-201ENSMUST00000158746 100 ntBASIC12.44□□□□□ -0.42
Lire1P11260 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC12.44□□□□□ -0.42
Lire1P11260 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.44□□□□□ -0.42
Lire1P11260 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC12.44□□□□□ -0.42
Lire1P11260 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.44□□□□□ -0.42
Lire1P11260 AC154595.3-201ENSMUST00000224579 384 ntBASIC12.44□□□□□ -0.42
Lire1P11260 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Lire1P11260 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.44□□□□□ -0.42
Lire1P11260 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Gm44913-201ENSMUST00000208060 2990 ntBASIC12.44□□□□□ -0.42
Lire1P11260 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lire1P11260 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Il17rd-203ENSMUST00000225146 3366 ntBASIC12.43□□□□□ -0.42
Lire1P11260 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Lire1P11260 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Lire1P11260 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Lire1P11260 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Gm15460-201ENSMUST00000118147 391 ntBASIC12.43□□□□□ -0.42
Lire1P11260 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
Lire1P11260 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Mir7085-201ENSMUST00000184353 66 ntBASIC12.43□□□□□ -0.42
Lire1P11260 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.43□□□□□ -0.42
Lire1P11260 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.43□□□□□ -0.42
Lire1P11260 Gm6916-202ENSMUST00000205523 195 ntBASIC12.43□□□□□ -0.42
Lire1P11260 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Lire1P11260 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Lire1P11260 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lire1P11260 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Lire1P11260 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Gm43014-201ENSMUST00000198568 2443 ntBASIC12.42□□□□□ -0.42
Lire1P11260 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC12.42□□□□□ -0.42
Lire1P11260 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lire1P11260 Gm12882-201ENSMUST00000121696 517 ntBASIC12.42□□□□□ -0.42
Lire1P11260 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms