Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 AC245100.5-201ENST00000452108 331 ntBASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 AL049597.2-201ENST00000565575 961 ntBASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28BQ9BUN5 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 SCARNA2-201ENST00000458748 420 ntBASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 AC091076.1-201ENST00000610741 619 ntBASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28BQ9BUN5 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AL359183.1-201ENST00000623796 2132 ntBASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 MIR3909-201ENST00000579518 119 ntBASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AC025062.2-201ENST00000605477 670 ntBASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28BQ9BUN5 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms