Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PGGT1BP2-201ENST00000398621 1028 ntBASIC11.4□□□□□ -0.58
PRKDCP78527 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 AC079112.1-201ENST00000454972 939 ntBASIC11.4□□□□□ -0.58
PRKDCP78527 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC11.4□□□□□ -0.58
PRKDCP78527 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC11.4□□□□□ -0.58
PRKDCP78527 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC11.4□□□□□ -0.58
PRKDCP78527 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 CAP2P1-201ENST00000557743 1390 ntBASIC11.4□□□□□ -0.58
PRKDCP78527 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC11.4□□□□□ -0.58
PRKDCP78527 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC11.4□□□□□ -0.58
PRKDCP78527 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
PRKDCP78527 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.59
PRKDCP78527 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
PRKDCP78527 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC11.4□□□□□ -0.59
PRKDCP78527 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
PRKDCP78527 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
PRKDCP78527 CYP2AB1P-202ENST00000454440 1456 ntBASIC11.4□□□□□ -0.59
PRKDCP78527 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
PRKDCP78527 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC11.39□□□□□ -0.59
PRKDCP78527 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 RTN3P1-201ENST00000536295 711 ntBASIC11.39□□□□□ -0.59
PRKDCP78527 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC11.39□□□□□ -0.59
PRKDCP78527 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC11.39□□□□□ -0.59
PRKDCP78527 AC006453.1-201ENST00000636037 1257 ntBASIC11.39□□□□□ -0.59
PRKDCP78527 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 EML3-217ENST00000531557 2509 ntTSL 5 BASIC11.39□□□□□ -0.59
PRKDCP78527 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC11.39□□□□□ -0.59
PRKDCP78527 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC11.39□□□□□ -0.59
PRKDCP78527 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC11.39□□□□□ -0.59
PRKDCP78527 AC242376.1-201ENST00000559033 726 ntBASIC11.39□□□□□ -0.59
PRKDCP78527 MIR5196-201ENST00000578146 115 ntBASIC11.39□□□□□ -0.59
PRKDCP78527 AC138466.4-201ENST00000623965 852 ntBASIC11.39□□□□□ -0.59
PRKDCP78527 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
PRKDCP78527 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC11.39□□□□□ -0.59
PRKDCP78527 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC11.39□□□□□ -0.59
PRKDCP78527 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC11.39□□□□□ -0.59
PRKDCP78527 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC11.39□□□□□ -0.59
PRKDCP78527 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC11.39□□□□□ -0.59
PRKDCP78527 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
PRKDCP78527 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 AC006335.1-201ENST00000445200 547 ntBASIC11.38□□□□□ -0.59
PRKDCP78527 PIN4P1-201ENST00000451079 396 ntBASIC11.38□□□□□ -0.59
PRKDCP78527 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC11.38□□□□□ -0.59
PRKDCP78527 MARK2P5-201ENST00000507649 634 ntBASIC11.38□□□□□ -0.59
PRKDCP78527 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC11.38□□□□□ -0.59
PRKDCP78527 C2orf69P1-201ENST00000563532 1093 ntBASIC11.38□□□□□ -0.59
PRKDCP78527 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
PRKDCP78527 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC11.38□□□□□ -0.59
PRKDCP78527 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
PRKDCP78527 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC11.38□□□□□ -0.59
PRKDCP78527 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC11.38□□□□□ -0.59
PRKDCP78527 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC11.38□□□□□ -0.59
PRKDCP78527 RPS15-202ENST00000585665 467 ntTSL 3 BASIC11.38□□□□□ -0.59
PRKDCP78527 RPS15-205ENST00000586686 562 ntTSL 5 BASIC11.38□□□□□ -0.59
PRKDCP78527 RPS15-208ENST00000591804 711 ntTSL 5 BASIC11.38□□□□□ -0.59
PRKDCP78527 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC11.38□□□□□ -0.59
PRKDCP78527 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC11.38□□□□□ -0.59
PRKDCP78527 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
PRKDCP78527 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC11.38□□□□□ -0.59
PRKDCP78527 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
PRKDCP78527 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms