Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lsm1Q8VC85 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.43■□□□□ 0.86
Lsm1Q8VC85 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Lsm1Q8VC85 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Lsm1Q8VC85 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Lsm1Q8VC85 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Lsm1Q8VC85 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Lsm1Q8VC85 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.42■□□□□ 0.86
Lsm1Q8VC85 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Lsm1Q8VC85 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.41■□□□□ 0.86
Lsm1Q8VC85 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Lsm1Q8VC85 Gm27502-201ENSMUST00000183495 199 ntBASIC20.41■□□□□ 0.86
Lsm1Q8VC85 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.41■□□□□ 0.86
Lsm1Q8VC85 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Lsm1Q8VC85 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Lsm1Q8VC85 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Lsm1Q8VC85 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Lsm1Q8VC85 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Lsm1Q8VC85 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.4■□□□□ 0.86
Lsm1Q8VC85 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Lsm1Q8VC85 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Lsm1Q8VC85 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Lsm1Q8VC85 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Lsm1Q8VC85 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
Lsm1Q8VC85 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Lsm1Q8VC85 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Lsm1Q8VC85 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Lsm1Q8VC85 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Lsm1Q8VC85 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Lsm1Q8VC85 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Lsm1Q8VC85 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Lsm1Q8VC85 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Lsm1Q8VC85 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Lsm1Q8VC85 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Lsm1Q8VC85 Gm11175-201ENSMUST00000116172 543 ntBASIC20.38■□□□□ 0.85
Lsm1Q8VC85 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Lsm1Q8VC85 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Lsm1Q8VC85 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
Lsm1Q8VC85 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.37■□□□□ 0.85
Lsm1Q8VC85 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Lsm1Q8VC85 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Lsm1Q8VC85 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.37■□□□□ 0.85
Lsm1Q8VC85 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Lsm1Q8VC85 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Lsm1Q8VC85 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Gm14523-201ENSMUST00000117260 558 ntBASIC20.36■□□□□ 0.85
Lsm1Q8VC85 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Lsm1Q8VC85 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Lsm1Q8VC85 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Lsm1Q8VC85 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Lsm1Q8VC85 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Lsm1Q8VC85 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lsm1Q8VC85 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lsm1Q8VC85 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lsm1Q8VC85 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Lsm1Q8VC85 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Lsm1Q8VC85 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Lsm1Q8VC85 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Lsm1Q8VC85 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.33■□□□□ 0.85
Lsm1Q8VC85 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Lsm1Q8VC85 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.33■□□□□ 0.84
Lsm1Q8VC85 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lsm1Q8VC85 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lsm1Q8VC85 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.32■□□□□ 0.84
Lsm1Q8VC85 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC20.32■□□□□ 0.84
Lsm1Q8VC85 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lsm1Q8VC85 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Lsm1Q8VC85 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lsm1Q8VC85 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lsm1Q8VC85 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
Lsm1Q8VC85 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.31■□□□□ 0.84
Lsm1Q8VC85 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Lsm1Q8VC85 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.31■□□□□ 0.84
Lsm1Q8VC85 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lsm1Q8VC85 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lsm1Q8VC85 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lsm1Q8VC85 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lsm1Q8VC85 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.3■□□□□ 0.84
Lsm1Q8VC85 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.3■□□□□ 0.84
Lsm1Q8VC85 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Lsm1Q8VC85 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.3■□□□□ 0.84
Lsm1Q8VC85 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Lsm1Q8VC85 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lsm1Q8VC85 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lsm1Q8VC85 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lsm1Q8VC85 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Lsm1Q8VC85 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lsm1Q8VC85 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lsm1Q8VC85 Gm7332-201ENSMUST00000118351 454 ntBASIC20.29■□□□□ 0.84
Lsm1Q8VC85 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Lsm1Q8VC85 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Lsm1Q8VC85 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms