Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 AL031713.1-201ENST00000564813 661 ntBASIC16.09■□□□□ 0.17
TTC28Q96AY4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 AC244250.3-201ENST00000620749 366 ntBASIC16.09■□□□□ 0.17
TTC28Q96AY4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TTC28Q96AY4 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TTC28Q96AY4 AC004899.1-201ENST00000424687 1714 ntBASIC16.08■□□□□ 0.17
TTC28Q96AY4 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
TTC28Q96AY4 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
TTC28Q96AY4 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
TTC28Q96AY4 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TTC28Q96AY4 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
TTC28Q96AY4 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
TTC28Q96AY4 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
TTC28Q96AY4 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.08■□□□□ 0.17
TTC28Q96AY4 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.08■□□□□ 0.17
TTC28Q96AY4 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.08■□□□□ 0.17
TTC28Q96AY4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
TTC28Q96AY4 AC021016.3-201ENST00000608367 477 ntBASIC16.08■□□□□ 0.17
TTC28Q96AY4 AC244157.2-201ENST00000616239 1006 ntBASIC16.08■□□□□ 0.17
TTC28Q96AY4 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.17
TTC28Q96AY4 AC004923.1-202ENST00000642106 209 ntBASIC16.08■□□□□ 0.17
TTC28Q96AY4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
TTC28Q96AY4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.08■□□□□ 0.17
TTC28Q96AY4 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 COX20P1-201ENST00000366529 357 ntBASIC16.08■□□□□ 0.16
TTC28Q96AY4 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 KRT18P25-201ENST00000508931 1278 ntBASIC16.08■□□□□ 0.16
TTC28Q96AY4 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TTC28Q96AY4 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TTC28Q96AY4 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.08■□□□□ 0.16
TTC28Q96AY4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 AC000095.1-201ENST00000603208 874 ntBASIC16.07■□□□□ 0.16
TTC28Q96AY4 AC107373.2-201ENST00000607735 490 ntBASIC16.07■□□□□ 0.16
TTC28Q96AY4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.07■□□□□ 0.16
TTC28Q96AY4 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TTC28Q96AY4 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.07■□□□□ 0.16
TTC28Q96AY4 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms