Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL512361.1-201ENST00000554200 418 ntBASIC18.14■□□□□ 0.49
MSH4O15457 AC011467.4-201ENST00000594891 528 ntBASIC18.14■□□□□ 0.49
MSH4O15457 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.14■□□□□ 0.49
MSH4O15457 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH4O15457 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
MSH4O15457 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH4O15457 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MSH4O15457 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH4O15457 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
MSH4O15457 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MSH4O15457 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
MSH4O15457 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.13■□□□□ 0.49
MSH4O15457 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
MSH4O15457 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 OR6D1P-203ENST00000641209 4860 ntBASIC18.13■□□□□ 0.49
MSH4O15457 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
MSH4O15457 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
MSH4O15457 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.13■□□□□ 0.49
MSH4O15457 EEF1DP4-201ENST00000446006 880 ntBASIC18.13■□□□□ 0.49
MSH4O15457 AC009477.1-201ENST00000452936 217 ntBASIC18.13■□□□□ 0.49
MSH4O15457 INGX-202ENST00000489074 768 ntBASIC18.13■□□□□ 0.49
MSH4O15457 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.13■□□□□ 0.49
MSH4O15457 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.13■□□□□ 0.49
MSH4O15457 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 AC010336.2-201ENST00000564226 506 ntBASIC18.13■□□□□ 0.49
MSH4O15457 AC009407.1-201ENST00000568958 598 ntBASIC18.13■□□□□ 0.49
MSH4O15457 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.13■□□□□ 0.49
MSH4O15457 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.13■□□□□ 0.49
MSH4O15457 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.13■□□□□ 0.49
MSH4O15457 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.13■□□□□ 0.49
MSH4O15457 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
MSH4O15457 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.13■□□□□ 0.49
MSH4O15457 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
MSH4O15457 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.13■□□□□ 0.49
MSH4O15457 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MSH4O15457 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.13■□□□□ 0.49
MSH4O15457 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
MSH4O15457 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
MSH4O15457 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
MSH4O15457 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.12■□□□□ 0.49
MSH4O15457 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH4O15457 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.12■□□□□ 0.49
MSH4O15457 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH4O15457 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.12■□□□□ 0.49
MSH4O15457 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH4O15457 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.12■□□□□ 0.49
MSH4O15457 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.12■□□□□ 0.49
MSH4O15457 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH4O15457 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.12■□□□□ 0.49
MSH4O15457 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH4O15457 AJ011932.1-201ENST00000621707 465 ntBASIC18.12■□□□□ 0.49
MSH4O15457 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH4O15457 AL033527.5-202ENST00000641632 1098 ntBASIC18.12■□□□□ 0.49
MSH4O15457 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH4O15457 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 KRT8P37-201ENST00000451609 1420 ntBASIC18.12■□□□□ 0.49
MSH4O15457 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
MSH4O15457 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH4O15457 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.12■□□□□ 0.49
MSH4O15457 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH4O15457 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH4O15457 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.12■□□□□ 0.49
MSH4O15457 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms