Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC007389.4-201ENST00000454674 793 ntBASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 SNX29P1-201ENST00000548357 1007 ntBASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 MIR4538-201ENST00000581377 78 ntBASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 AL109936.8-201ENST00000641772 604 ntBASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 AL138688.1-201ENST00000624851 1594 ntBASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMD1Q9UGP4 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 CROCCP2-202ENST00000412962 2773 ntBASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 TNRC18P3-201ENST00000441896 2691 ntBASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 CROCCP4-201ENST00000457096 498 ntBASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMD1Q9UGP4 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms