Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN9P43378 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN9P43378 CICP6-201ENST00000457191 2729 ntBASIC16.88■□□□□ 0.29
PTPN9P43378 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN9P43378 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PTPN9P43378 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
PTPN9P43378 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 CNN2P11-201ENST00000429351 262 ntBASIC16.88■□□□□ 0.29
PTPN9P43378 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN9P43378 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN9P43378 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.88■□□□□ 0.29
PTPN9P43378 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.88■□□□□ 0.29
PTPN9P43378 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN9P43378 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.88■□□□□ 0.29
PTPN9P43378 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
PTPN9P43378 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN9P43378 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN9P43378 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.88■□□□□ 0.29
PTPN9P43378 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN9P43378 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
PTPN9P43378 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 AC010491.1-201ENST00000563101 2797 ntBASIC16.88■□□□□ 0.29
PTPN9P43378 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN9P43378 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PTPN9P43378 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN9P43378 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
PTPN9P43378 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN9P43378 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.87■□□□□ 0.29
PTPN9P43378 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 MIR1233-2-201ENST00000408138 82 ntBASIC16.87■□□□□ 0.29
PTPN9P43378 MIR1233-1-201ENST00000408722 82 ntBASIC16.87■□□□□ 0.29
PTPN9P43378 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.87■□□□□ 0.29
PTPN9P43378 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.87■□□□□ 0.29
PTPN9P43378 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
PTPN9P43378 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PTPN9P43378 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
PTPN9P43378 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN9P43378 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.87■□□□□ 0.29
PTPN9P43378 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
PTPN9P43378 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
PTPN9P43378 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PTPN9P43378 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN9P43378 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN9P43378 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN9P43378 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PTPN9P43378 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN9P43378 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.86■□□□□ 0.29
PTPN9P43378 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
PTPN9P43378 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
PTPN9P43378 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
PTPN9P43378 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
PTPN9P43378 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 AC011477.6-201ENST00000604980 1927 ntBASIC16.86■□□□□ 0.29
PTPN9P43378 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.86■□□□□ 0.29
PTPN9P43378 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
PTPN9P43378 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
PTPN9P43378 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 RPS8P6-201ENST00000426177 609 ntBASIC16.86■□□□□ 0.29
PTPN9P43378 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.86■□□□□ 0.29
PTPN9P43378 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.86■□□□□ 0.29
PTPN9P43378 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN9P43378 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
PTPN9P43378 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms