Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 REXO1L8P-201ENST00000604378 1897 ntBASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 AL603832.2-201ENST00000566195 2125 ntBASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 AC005052.1-201ENST00000625181 2492 ntBASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 AC018712.1-201ENST00000455767 687 ntBASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 AL160237.2-201ENST00000556165 472 ntBASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC54Q8NEL0 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 KRT18P67-201ENST00000432816 1264 ntBASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 LINC02199-201ENST00000506655 2702 ntBASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 AL031432.2-201ENST00000566714 459 ntBASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 AL928711.1-201ENST00000570165 459 ntBASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 AL121912.1-201ENST00000603683 238 ntBASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC54Q8NEL0 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.27□□□□□ -0.12
CCDC54Q8NEL0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 RNU1-129P-201ENST00000384064 167 ntBASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 FAM197Y8-203ENST00000450145 560 ntBASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 CXCL1P1-201ENST00000502804 216 ntBASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms