Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 FO393414.2-201ENST00000405153 598 ntBASIC16.54■□□□□ 0.24
HOXC11O43248 AC087499.6-201ENST00000411576 835 ntBASIC16.54■□□□□ 0.24
HOXC11O43248 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.54■□□□□ 0.24
HOXC11O43248 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.54■□□□□ 0.24
HOXC11O43248 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.54■□□□□ 0.24
HOXC11O43248 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.54■□□□□ 0.24
HOXC11O43248 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.54■□□□□ 0.24
HOXC11O43248 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.54■□□□□ 0.24
HOXC11O43248 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC11O43248 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.54■□□□□ 0.24
HOXC11O43248 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HOXC11O43248 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.54■□□□□ 0.24
HOXC11O43248 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.54■□□□□ 0.24
HOXC11O43248 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.54■□□□□ 0.24
HOXC11O43248 SRD5A3P1-201ENST00000603021 949 ntBASIC16.54■□□□□ 0.24
HOXC11O43248 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HOXC11O43248 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HOXC11O43248 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.54■□□□□ 0.24
HOXC11O43248 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.54■□□□□ 0.24
HOXC11O43248 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
HOXC11O43248 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC11O43248 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.54■□□□□ 0.24
HOXC11O43248 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.54■□□□□ 0.24
HOXC11O43248 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
HOXC11O43248 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HOXC11O43248 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
HOXC11O43248 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC11O43248 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC11O43248 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HOXC11O43248 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.53■□□□□ 0.24
HOXC11O43248 CU639417.3-201ENST00000624240 1404 ntBASIC16.53■□□□□ 0.24
HOXC11O43248 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC11O43248 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.53■□□□□ 0.24
HOXC11O43248 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC11O43248 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
HOXC11O43248 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.53■□□□□ 0.24
HOXC11O43248 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.53■□□□□ 0.24
HOXC11O43248 AC245100.5-201ENST00000452108 331 ntBASIC16.53■□□□□ 0.24
HOXC11O43248 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.53■□□□□ 0.24
HOXC11O43248 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC11O43248 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC11O43248 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC11O43248 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC11O43248 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.53■□□□□ 0.24
HOXC11O43248 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.53■□□□□ 0.24
HOXC11O43248 AC004461.2-201ENST00000629517 803 ntBASIC16.53■□□□□ 0.24
HOXC11O43248 AL109936.8-201ENST00000641772 604 ntBASIC16.53■□□□□ 0.24
HOXC11O43248 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC11O43248 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 AL592424.1-201ENST00000563624 1536 ntBASIC16.53■□□□□ 0.24
HOXC11O43248 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 OR6D1P-202ENST00000641007 5290 ntBASIC16.53■□□□□ 0.24
HOXC11O43248 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.53■□□□□ 0.24
HOXC11O43248 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.53■□□□□ 0.24
HOXC11O43248 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HOXC11O43248 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
HOXC11O43248 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HOXC11O43248 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.52■□□□□ 0.24
HOXC11O43248 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HOXC11O43248 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.52■□□□□ 0.24
HOXC11O43248 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.52■□□□□ 0.24
HOXC11O43248 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.52■□□□□ 0.24
HOXC11O43248 HIST3H2BA-201ENST00000436555 524 ntBASIC16.52■□□□□ 0.24
HOXC11O43248 AC244107.1-201ENST00000442033 332 ntBASIC16.52■□□□□ 0.24
HOXC11O43248 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.52■□□□□ 0.24
HOXC11O43248 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.52■□□□□ 0.24
HOXC11O43248 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.52■□□□□ 0.24
HOXC11O43248 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.52■□□□□ 0.24
HOXC11O43248 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.52■□□□□ 0.24
HOXC11O43248 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
HOXC11O43248 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HOXC11O43248 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HOXC11O43248 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HOXC11O43248 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HOXC11O43248 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HOXC11O43248 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms