Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 AC087499.6-201ENST00000411576 835 ntBASIC14.36□□□□□ -0.11
TFF3Q07654 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
TFF3Q07654 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.36□□□□□ -0.11
TFF3Q07654 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.36□□□□□ -0.11
TFF3Q07654 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
TFF3Q07654 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.36□□□□□ -0.11
TFF3Q07654 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
TFF3Q07654 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.36□□□□□ -0.11
TFF3Q07654 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
TFF3Q07654 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
TFF3Q07654 SNX33P1-201ENST00000592116 1762 ntBASIC14.36□□□□□ -0.11
TFF3Q07654 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 CROCCP2-202ENST00000412962 2773 ntBASIC14.36□□□□□ -0.11
TFF3Q07654 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
TFF3Q07654 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.36□□□□□ -0.11
TFF3Q07654 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TFF3Q07654 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.35□□□□□ -0.11
TFF3Q07654 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.35□□□□□ -0.11
TFF3Q07654 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
TFF3Q07654 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.35□□□□□ -0.11
TFF3Q07654 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
TFF3Q07654 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
TFF3Q07654 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.35□□□□□ -0.11
TFF3Q07654 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
TFF3Q07654 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.35□□□□□ -0.11
TFF3Q07654 AL512384.1-201ENST00000406683 331 ntBASIC14.35□□□□□ -0.11
TFF3Q07654 AP006294.1-201ENST00000415407 339 ntBASIC14.35□□□□□ -0.11
TFF3Q07654 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.35□□□□□ -0.11
TFF3Q07654 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.35□□□□□ -0.11
TFF3Q07654 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.35□□□□□ -0.11
TFF3Q07654 RN7SL618P-201ENST00000477850 296 ntBASIC14.35□□□□□ -0.11
TFF3Q07654 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.35□□□□□ -0.11
TFF3Q07654 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
TFF3Q07654 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.35□□□□□ -0.11
TFF3Q07654 CHCHD2P3-201ENST00000603038 451 ntBASIC14.35□□□□□ -0.11
TFF3Q07654 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
TFF3Q07654 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.35□□□□□ -0.11
TFF3Q07654 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
TFF3Q07654 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.35□□□□□ -0.11
TFF3Q07654 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
TFF3Q07654 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 KRT8P39-201ENST00000396270 1433 ntBASIC14.34□□□□□ -0.11
TFF3Q07654 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
TFF3Q07654 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
TFF3Q07654 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
TFF3Q07654 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 AC079776.1-201ENST00000401540 1152 ntBASIC14.34□□□□□ -0.11
TFF3Q07654 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.34□□□□□ -0.11
TFF3Q07654 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 RN7SL752P-201ENST00000463779 287 ntBASIC14.34□□□□□ -0.11
TFF3Q07654 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
TFF3Q07654 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.34□□□□□ -0.11
TFF3Q07654 AC093004.1-201ENST00000508850 424 ntBASIC14.34□□□□□ -0.11
TFF3Q07654 SPDYE18-201ENST00000510091 1050 ntBASIC14.34□□□□□ -0.11
TFF3Q07654 DOC2GP-202ENST00000514950 1163 ntBASIC14.34□□□□□ -0.11
TFF3Q07654 WASH4P-201ENST00000564273 1246 ntBASIC14.34□□□□□ -0.11
TFF3Q07654 AL162274.1-201ENST00000617191 1098 ntBASIC14.34□□□□□ -0.11
TFF3Q07654 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
TFF3Q07654 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms