Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Scn1bP97952 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Scn1bP97952 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Scn1bP97952 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Scn1bP97952 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.22□□□□□ -0.45
Scn1bP97952 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Scn1bP97952 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Scn1bP97952 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Scn1bP97952 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.22□□□□□ -0.45
Scn1bP97952 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.22□□□□□ -0.45
Scn1bP97952 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC12.21□□□□□ -0.45
Scn1bP97952 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.21□□□□□ -0.45
Scn1bP97952 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Scn1bP97952 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Gm44851-201ENSMUST00000205735 2309 ntBASIC12.21□□□□□ -0.45
Scn1bP97952 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Scn1bP97952 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Scn1bP97952 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC12.21□□□□□ -0.45
Scn1bP97952 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.45
Scn1bP97952 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.45
Scn1bP97952 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Gm17271-201ENSMUST00000165535 355 ntBASIC12.21□□□□□ -0.45
Scn1bP97952 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Scn1bP97952 Gm17968-201ENSMUST00000194902 784 ntBASIC12.21□□□□□ -0.45
Scn1bP97952 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 AC090659.1-201ENSMUST00000224334 768 ntBASIC12.21□□□□□ -0.45
Scn1bP97952 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Scn1bP97952 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Scn1bP97952 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Scn1bP97952 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Scn1bP97952 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Scn1bP97952 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Scn1bP97952 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.21□□□□□ -0.46
Scn1bP97952 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Scn1bP97952 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
Scn1bP97952 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Scn1bP97952 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
Scn1bP97952 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Scn1bP97952 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Scn1bP97952 Mir874-201ENSMUST00000104769 76 ntBASIC12.2□□□□□ -0.46
Scn1bP97952 Gm9727-201ENSMUST00000161387 555 ntBASIC12.2□□□□□ -0.46
Scn1bP97952 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Scn1bP97952 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Gm18206-201ENSMUST00000207027 926 ntBASIC12.2□□□□□ -0.46
Scn1bP97952 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC12.2□□□□□ -0.46
Scn1bP97952 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 AC122314.1-201ENSMUST00000223056 2239 ntBASIC12.2□□□□□ -0.46
Scn1bP97952 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Scn1bP97952 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.2□□□□□ -0.46
Scn1bP97952 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Scn1bP97952 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Scn1bP97952 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Scn1bP97952 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Scn1bP97952 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.19□□□□□ -0.46
Scn1bP97952 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Scn1bP97952 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Scn1bP97952 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Scn1bP97952 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms