Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IGLL3P-201ENST00000412472 434 ntBASIC15.9■□□□□ 0.14
FOXA1P55317 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
FOXA1P55317 AC108751.1-201ENST00000490852 363 ntBASIC15.9■□□□□ 0.14
FOXA1P55317 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.9■□□□□ 0.14
FOXA1P55317 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.9■□□□□ 0.14
FOXA1P55317 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.9■□□□□ 0.14
FOXA1P55317 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 MIR4751-201ENST00000578027 74 ntBASIC15.9■□□□□ 0.14
FOXA1P55317 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.9■□□□□ 0.14
FOXA1P55317 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
FOXA1P55317 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
FOXA1P55317 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.9■□□□□ 0.14
FOXA1P55317 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA1P55317 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXA1P55317 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXA1P55317 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXA1P55317 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 MIR648-201ENST00000385046 94 ntBASIC15.89■□□□□ 0.13
FOXA1P55317 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.89■□□□□ 0.13
FOXA1P55317 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
FOXA1P55317 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA1P55317 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
FOXA1P55317 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
FOXA1P55317 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA1P55317 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
FOXA1P55317 AL031008.1-201ENST00000619963 541 ntBASIC15.89■□□□□ 0.13
FOXA1P55317 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
FOXA1P55317 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
FOXA1P55317 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
FOXA1P55317 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA1P55317 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA1P55317 AC073347.1-201ENST00000421633 2643 ntBASIC15.89■□□□□ 0.13
FOXA1P55317 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
FOXA1P55317 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
FOXA1P55317 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.89■□□□□ 0.13
FOXA1P55317 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
FOXA1P55317 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.89■□□□□ 0.13
FOXA1P55317 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.89■□□□□ 0.13
FOXA1P55317 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
FOXA1P55317 AC126177.1-201ENST00000547829 2218 ntBASIC15.88■□□□□ 0.13
FOXA1P55317 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.88■□□□□ 0.13
FOXA1P55317 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.88■□□□□ 0.13
FOXA1P55317 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 RPS2P28-201ENST00000314255 741 ntBASIC15.88■□□□□ 0.13
FOXA1P55317 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
FOXA1P55317 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.88■□□□□ 0.13
FOXA1P55317 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.88■□□□□ 0.13
FOXA1P55317 AC098831.1-202ENST00000438821 336 ntBASIC15.88■□□□□ 0.13
FOXA1P55317 PRSS29P-201ENST00000440800 595 ntBASIC15.88■□□□□ 0.13
FOXA1P55317 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.88■□□□□ 0.13
FOXA1P55317 AL513480.1-201ENST00000451731 511 ntBASIC15.88■□□□□ 0.13
FOXA1P55317 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.88■□□□□ 0.13
FOXA1P55317 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
FOXA1P55317 RN7SL510P-201ENST00000581311 263 ntBASIC15.88■□□□□ 0.13
FOXA1P55317 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.88■□□□□ 0.13
FOXA1P55317 AC021097.1-201ENST00000607902 574 ntBASIC15.88■□□□□ 0.13
FOXA1P55317 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.88■□□□□ 0.13
FOXA1P55317 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms