Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.74■□□□□ 0.43
KRT39Q6A163 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.74■□□□□ 0.43
KRT39Q6A163 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
KRT39Q6A163 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.74■□□□□ 0.43
KRT39Q6A163 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
KRT39Q6A163 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
KRT39Q6A163 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 TNRC18P3-201ENST00000441896 2691 ntBASIC17.74■□□□□ 0.43
KRT39Q6A163 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.73■□□□□ 0.43
KRT39Q6A163 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
KRT39Q6A163 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
KRT39Q6A163 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
KRT39Q6A163 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.73■□□□□ 0.43
KRT39Q6A163 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.73■□□□□ 0.43
KRT39Q6A163 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
KRT39Q6A163 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
KRT39Q6A163 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
KRT39Q6A163 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 HTR5BP-201ENST00000430851 1154 ntBASIC17.73■□□□□ 0.43
KRT39Q6A163 DNAJB3-201ENST00000446806 729 ntBASIC17.73■□□□□ 0.43
KRT39Q6A163 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.73■□□□□ 0.43
KRT39Q6A163 RN7SL589P-201ENST00000481268 310 ntBASIC17.73■□□□□ 0.43
KRT39Q6A163 ALG1L5P-201ENST00000482043 771 ntBASIC17.73■□□□□ 0.43
KRT39Q6A163 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.73■□□□□ 0.43
KRT39Q6A163 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.73■□□□□ 0.43
KRT39Q6A163 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.73■□□□□ 0.43
KRT39Q6A163 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.73■□□□□ 0.43
KRT39Q6A163 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.73■□□□□ 0.43
KRT39Q6A163 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.73■□□□□ 0.43
KRT39Q6A163 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.73■□□□□ 0.43
KRT39Q6A163 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
KRT39Q6A163 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
KRT39Q6A163 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.73■□□□□ 0.43
KRT39Q6A163 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.73■□□□□ 0.43
KRT39Q6A163 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.72■□□□□ 0.43
KRT39Q6A163 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.72■□□□□ 0.43
KRT39Q6A163 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
KRT39Q6A163 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
KRT39Q6A163 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
KRT39Q6A163 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
KRT39Q6A163 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.72■□□□□ 0.43
KRT39Q6A163 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.72■□□□□ 0.43
KRT39Q6A163 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.72■□□□□ 0.43
KRT39Q6A163 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
KRT39Q6A163 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms