Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Cdx1P18111 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdx1P18111 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Cdx1P18111 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdx1P18111 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Cdx1P18111 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdx1P18111 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cdx1P18111 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdx1P18111 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdx1P18111 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdx1P18111 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdx1P18111 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cdx1P18111 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Cdx1P18111 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC17.09■□□□□ 0.33
Cdx1P18111 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC17.09■□□□□ 0.33
Cdx1P18111 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Cdx1P18111 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdx1P18111 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.09■□□□□ 0.33
Cdx1P18111 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cdx1P18111 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdx1P18111 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Cdx1P18111 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdx1P18111 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cdx1P18111 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cdx1P18111 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cdx1P18111 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cdx1P18111 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Cdx1P18111 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC17.07■□□□□ 0.32
Cdx1P18111 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Cdx1P18111 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx1P18111 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx1P18111 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx1P18111 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC17.06■□□□□ 0.32
Cdx1P18111 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Cdx1P18111 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cdx1P18111 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx1P18111 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx1P18111 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx1P18111 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx1P18111 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx1P18111 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx1P18111 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx1P18111 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Cdx1P18111 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Cdx1P18111 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx1P18111 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cdx1P18111 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Cdx1P18111 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx1P18111 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx1P18111 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx1P18111 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Cdx1P18111 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC17.04■□□□□ 0.32
Cdx1P18111 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC17.04■□□□□ 0.32
Cdx1P18111 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC17.04■□□□□ 0.32
Cdx1P18111 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx1P18111 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx1P18111 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Cdx1P18111 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx1P18111 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Cdx1P18111 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdx1P18111 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Cdx1P18111 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx1P18111 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx1P18111 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx1P18111 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx1P18111 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx1P18111 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx1P18111 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx1P18111 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdx1P18111 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx1P18111 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Cdx1P18111 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdx1P18111 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC17.02■□□□□ 0.32
Cdx1P18111 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdx1P18111 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx1P18111 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx1P18111 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx1P18111 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx1P18111 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdx1P18111 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.01■□□□□ 0.31
Cdx1P18111 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Cdx1P18111 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Cdx1P18111 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Cdx1P18111 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdx1P18111 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Cdx1P18111 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC17■□□□□ 0.31
Cdx1P18111 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Cdx1P18111 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cdx1P18111 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC17■□□□□ 0.31
Cdx1P18111 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdx1P18111 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdx1P18111 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdx1P18111 AC154454.1-201ENSMUST00000225253 216 ntBASIC16.99■□□□□ 0.31
Cdx1P18111 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdx1P18111 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdx1P18111 Gm4799-201ENSMUST00000095396 657 ntBASIC16.99■□□□□ 0.31
Cdx1P18111 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC16.99■□□□□ 0.31
Cdx1P18111 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdx1P18111 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdx1P18111 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms