Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
Col4a1P02463 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Col4a1P02463 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Col4a1P02463 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Col4a1P02463 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC27.12■■□□□ 1.93
Col4a1P02463 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Col4a1P02463 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Col4a1P02463 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Col4a1P02463 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Col4a1P02463 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
Col4a1P02463 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC27.11■■□□□ 1.93
Col4a1P02463 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
Col4a1P02463 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Col4a1P02463 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC27.1■■□□□ 1.93
Col4a1P02463 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Col4a1P02463 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC27.1■■□□□ 1.93
Col4a1P02463 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Col4a1P02463 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Col4a1P02463 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC27.09■■□□□ 1.93
Col4a1P02463 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Col4a1P02463 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Col4a1P02463 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
Col4a1P02463 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.92
Col4a1P02463 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Col4a1P02463 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
Col4a1P02463 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC27.05■■□□□ 1.92
Col4a1P02463 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Col4a1P02463 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
Col4a1P02463 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC27.05■■□□□ 1.92
Col4a1P02463 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC27.04■■□□□ 1.92
Col4a1P02463 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC27.04■■□□□ 1.92
Col4a1P02463 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC27.04■■□□□ 1.92
Col4a1P02463 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Col4a1P02463 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC27.04■■□□□ 1.92
Col4a1P02463 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC27.03■■□□□ 1.92
Col4a1P02463 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Col4a1P02463 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
Col4a1P02463 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
Col4a1P02463 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC27.02■■□□□ 1.92
Col4a1P02463 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Col4a1P02463 Gm10399-202ENSMUST00000202768 748 ntBASIC27.01■■□□□ 1.92
Col4a1P02463 Gm13241-201ENSMUST00000094493 780 ntBASIC27.01■■□□□ 1.92
Col4a1P02463 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Col4a1P02463 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
Col4a1P02463 Gm9847-201ENSMUST00000052528 599 ntBASIC27■■□□□ 1.91
Col4a1P02463 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Col4a1P02463 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Col4a1P02463 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Col4a1P02463 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Col4a1P02463 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Col4a1P02463 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Col4a1P02463 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
Col4a1P02463 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
Col4a1P02463 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Col4a1P02463 Gm43034-201ENSMUST00000198678 1364 ntBASIC26.98■■□□□ 1.91
Col4a1P02463 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
Col4a1P02463 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Col4a1P02463 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
Col4a1P02463 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Col4a1P02463 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Col4a1P02463 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
Col4a1P02463 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC26.95■■□□□ 1.91
Col4a1P02463 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC26.95■■□□□ 1.91
Col4a1P02463 Gm10620-201ENSMUST00000098379 1332 ntBASIC26.95■■□□□ 1.9
Col4a1P02463 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Col4a1P02463 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC26.95■■□□□ 1.9
Col4a1P02463 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.94■■□□□ 1.9
Col4a1P02463 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Col4a1P02463 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
Col4a1P02463 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Col4a1P02463 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Col4a1P02463 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Col4a1P02463 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC26.93■■□□□ 1.9
Col4a1P02463 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Col4a1P02463 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC26.93■■□□□ 1.9
Col4a1P02463 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Col4a1P02463 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Col4a1P02463 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC26.93■■□□□ 1.9
Col4a1P02463 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Col4a1P02463 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Col4a1P02463 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Col4a1P02463 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
Col4a1P02463 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Col4a1P02463 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Col4a1P02463 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
Col4a1P02463 Gm12922-201ENSMUST00000120626 809 ntBASIC26.92■■□□□ 1.9
Col4a1P02463 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC26.91■■□□□ 1.9
Col4a1P02463 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
Col4a1P02463 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Col4a1P02463 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC26.91■■□□□ 1.9
Col4a1P02463 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Col4a1P02463 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Col4a1P02463 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Col4a1P02463 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC26.9■■□□□ 1.9
Col4a1P02463 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC26.9■■□□□ 1.9
Col4a1P02463 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC26.9■■□□□ 1.9
Col4a1P02463 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Col4a1P02463 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC26.9■■□□□ 1.9
Col4a1P02463 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
Col4a1P02463 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC26.89■■□□□ 1.89
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms