Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VRK3Q8IV63 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.1■□□□□ 0.17
VRK3Q8IV63 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 FOXO1B-201ENST00000504678 1527 ntBASIC16.09■□□□□ 0.17
VRK3Q8IV63 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 TNRC18P3-201ENST00000441896 2691 ntBASIC16.09■□□□□ 0.17
VRK3Q8IV63 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 KRT18P13-201ENST00000400056 1290 ntBASIC16.09■□□□□ 0.17
VRK3Q8IV63 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 FAM86C2P-203ENST00000528684 1004 ntBASIC16.09■□□□□ 0.17
VRK3Q8IV63 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 AC105339.1-204ENST00000636249 355 ntBASIC16.09■□□□□ 0.17
VRK3Q8IV63 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VRK3Q8IV63 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.09■□□□□ 0.17
VRK3Q8IV63 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
VRK3Q8IV63 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VRK3Q8IV63 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.08■□□□□ 0.17
VRK3Q8IV63 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.08■□□□□ 0.17
VRK3Q8IV63 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
VRK3Q8IV63 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
VRK3Q8IV63 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.08■□□□□ 0.17
VRK3Q8IV63 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 LINC01225-203ENST00000563550 1244 ntBASIC16.08■□□□□ 0.16
VRK3Q8IV63 AC027307.2-201ENST00000591252 911 ntBASIC16.08■□□□□ 0.16
VRK3Q8IV63 AC022145.2-201ENST00000598203 171 ntBASIC16.08■□□□□ 0.16
VRK3Q8IV63 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 DOC2GP-204ENST00000639052 2548 ntBASIC16.08■□□□□ 0.16
VRK3Q8IV63 CYP2T1P-202ENST00000641596 2535 ntBASIC16.08■□□□□ 0.16
VRK3Q8IV63 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.08■□□□□ 0.16
VRK3Q8IV63 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
VRK3Q8IV63 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
VRK3Q8IV63 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms