Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 GNRHR2-203ENST00000581100 1187 ntBASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC88AQ3V6T2 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 RARRES2P5-201ENST00000564013 466 ntBASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 RN7SL560P-201ENST00000577943 264 ntBASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 AC103810.3-201ENST00000583567 96 ntBASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC88AQ3V6T2 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 RHOA-206ENST00000454011 889 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 AC244669.2-201ENST00000612320 853 ntBASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 MIR6069-201ENST00000620069 79 ntBASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC88AQ3V6T2 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 MPV17-206ENST00000402722 827 ntTSL 3 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 AL022328.1-201ENST00000610050 478 ntBASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC88AQ3V6T2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms