Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 AL022328.3-201ENST00000607943 679 ntBASIC16.05■□□□□ 0.16
VPS13AQ96RL7 AC097724.1-201ENST00000609581 426 ntBASIC16.05■□□□□ 0.16
VPS13AQ96RL7 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 AC036164.1-201ENST00000570544 333 ntBASIC16.05■□□□□ 0.16
VPS13AQ96RL7 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13AQ96RL7 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 MIR326-201ENST00000362220 95 ntBASIC16.04■□□□□ 0.16
VPS13AQ96RL7 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 BX284668.4-201ENST00000453917 508 ntBASIC16.04■□□□□ 0.16
VPS13AQ96RL7 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.04■□□□□ 0.16
VPS13AQ96RL7 PTP4A1P2-201ENST00000546033 454 ntBASIC16.04■□□□□ 0.16
VPS13AQ96RL7 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 RN7SL720P-201ENST00000488178 304 ntBASIC16.04■□□□□ 0.16
VPS13AQ96RL7 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS13AQ96RL7 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AC135050.7-201ENST00000624508 2218 ntBASIC16.03■□□□□ 0.16
VPS13AQ96RL7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AC074044.1-201ENST00000609673 707 ntBASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AL158212.4-201ENST00000624062 1286 ntBASIC16.03■□□□□ 0.16
VPS13AQ96RL7 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AC079316.1-201ENST00000548397 411 ntBASIC16.03■□□□□ 0.16
VPS13AQ96RL7 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS13AQ96RL7 BICD1-207ENST00000551848 1962 ntBASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms