Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.13■□□□□ 0.33
PTPN9P43378 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.13■□□□□ 0.33
PTPN9P43378 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.13■□□□□ 0.33
PTPN9P43378 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.13■□□□□ 0.33
PTPN9P43378 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.13■□□□□ 0.33
PTPN9P43378 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
PTPN9P43378 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 AL596087.1-201ENST00000400979 1969 ntBASIC17.13■□□□□ 0.33
PTPN9P43378 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PTPN9P43378 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN9P43378 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.12■□□□□ 0.33
PTPN9P43378 PCDH8P1-201ENST00000428983 2773 ntBASIC17.12■□□□□ 0.33
PTPN9P43378 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PTPN9P43378 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.12■□□□□ 0.33
PTPN9P43378 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PTPN9P43378 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 AC079328.2-201ENST00000561241 3354 ntBASIC17.12■□□□□ 0.33
PTPN9P43378 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.12■□□□□ 0.33
PTPN9P43378 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.12■□□□□ 0.33
PTPN9P43378 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.12■□□□□ 0.33
PTPN9P43378 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.12■□□□□ 0.33
PTPN9P43378 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.12■□□□□ 0.33
PTPN9P43378 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.12■□□□□ 0.33
PTPN9P43378 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.12■□□□□ 0.33
PTPN9P43378 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.12■□□□□ 0.33
PTPN9P43378 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.12■□□□□ 0.33
PTPN9P43378 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.12■□□□□ 0.33
PTPN9P43378 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
PTPN9P43378 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PTPN9P43378 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
PTPN9P43378 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.12■□□□□ 0.33
PTPN9P43378 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.12■□□□□ 0.33
PTPN9P43378 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN9P43378 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.12■□□□□ 0.33
PTPN9P43378 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.11■□□□□ 0.33
PTPN9P43378 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.11■□□□□ 0.33
PTPN9P43378 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 AL513523.2-202ENST00000427283 2040 ntBASIC17.11■□□□□ 0.33
PTPN9P43378 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 AC026691.1-201ENST00000602502 2017 ntBASIC17.11■□□□□ 0.33
PTPN9P43378 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN9P43378 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN9P43378 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
PTPN9P43378 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.11■□□□□ 0.33
PTPN9P43378 YBX1P5-201ENST00000509441 847 ntBASIC17.11■□□□□ 0.33
PTPN9P43378 AC243562.1-201ENST00000560672 389 ntBASIC17.11■□□□□ 0.33
PTPN9P43378 AL138918.1-201ENST00000568306 659 ntBASIC17.11■□□□□ 0.33
PTPN9P43378 AC005829.1-201ENST00000570002 483 ntBASIC17.11■□□□□ 0.33
PTPN9P43378 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.11■□□□□ 0.33
PTPN9P43378 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PTPN9P43378 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.11■□□□□ 0.33
PTPN9P43378 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.11■□□□□ 0.33
PTPN9P43378 AC026120.1-201ENST00000611536 926 ntBASIC17.11■□□□□ 0.33
PTPN9P43378 AC008267.7-201ENST00000624570 1194 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms