Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Msx1P13297 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Msx1P13297 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Msx1P13297 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Msx1P13297 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.89□□□□□ -0.35
Msx1P13297 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Msx1P13297 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Gm15579-201ENSMUST00000141299 757 ntTSL 3 BASIC12.89□□□□□ -0.35
Msx1P13297 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Gm16701-202ENSMUST00000180995 934 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Gm4804-201ENSMUST00000182234 999 ntBASIC12.89□□□□□ -0.35
Msx1P13297 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Gm45610-201ENSMUST00000209227 784 ntBASIC12.89□□□□□ -0.35
Msx1P13297 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.89□□□□□ -0.35
Msx1P13297 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.89□□□□□ -0.35
Msx1P13297 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.89□□□□□ -0.35
Msx1P13297 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.89□□□□□ -0.35
Msx1P13297 AC110817.1-201ENSMUST00000225706 605 ntBASIC12.89□□□□□ -0.35
Msx1P13297 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC12.89□□□□□ -0.35
Msx1P13297 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Msx1P13297 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Msx1P13297 Gm10710-201ENSMUST00000047876 3971 ntBASIC12.89□□□□□ -0.35
Msx1P13297 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
Msx1P13297 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Msx1P13297 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
Msx1P13297 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Msx1P13297 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msx1P13297 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Msx1P13297 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC12.88□□□□□ -0.35
Msx1P13297 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC12.88□□□□□ -0.35
Msx1P13297 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Gm3809-201ENSMUST00000180973 1006 ntBASIC12.88□□□□□ -0.35
Msx1P13297 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Msx1P13297 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC12.88□□□□□ -0.35
Msx1P13297 Gm21470-201ENSMUST00000187680 696 ntBASIC12.88□□□□□ -0.35
Msx1P13297 Gm29741-201ENSMUST00000192667 421 ntBASIC12.88□□□□□ -0.35
Msx1P13297 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.88□□□□□ -0.35
Msx1P13297 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.88□□□□□ -0.35
Msx1P13297 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC12.88□□□□□ -0.35
Msx1P13297 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Msx1P13297 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC12.88□□□□□ -0.35
Msx1P13297 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msx1P13297 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.88□□□□□ -0.35
Msx1P13297 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC12.88□□□□□ -0.35
Msx1P13297 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Msx1P13297 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Msx1P13297 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Msx1P13297 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC12.87□□□□□ -0.35
Msx1P13297 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 439.4 ms