Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NUP210P1-202ENST00000504322 710 ntBASIC12.58□□□□□ -0.4
COL6A5A8TX70 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 PGAM1P5-201ENST00000548011 764 ntBASIC12.58□□□□□ -0.4
COL6A5A8TX70 AC024267.1-201ENST00000582320 895 ntBASIC12.58□□□□□ -0.4
COL6A5A8TX70 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
COL6A5A8TX70 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
COL6A5A8TX70 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 TEX30-203ENST00000376022 828 ntTSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 MIR1202-201ENST00000408529 83 ntBASIC12.57□□□□□ -0.4
COL6A5A8TX70 PFN2-202ENST00000423691 911 ntTSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 MSRA-203ENST00000441698 788 ntTSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 AL645939.5-201ENST00000606834 243 ntBASIC12.57□□□□□ -0.4
COL6A5A8TX70 AL158212.4-201ENST00000624062 1286 ntBASIC12.57□□□□□ -0.4
COL6A5A8TX70 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 KRT8P49-201ENST00000604166 1432 ntBASIC12.57□□□□□ -0.4
COL6A5A8TX70 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC12.57□□□□□ -0.4
COL6A5A8TX70 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
COL6A5A8TX70 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 FRMD8P1-201ENST00000440433 1524 ntBASIC12.56□□□□□ -0.4
COL6A5A8TX70 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 WDR7-208ENST00000589935 544 ntTSL 4 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 AC073352.2-201ENST00000609385 439 ntBASIC12.56□□□□□ -0.4
COL6A5A8TX70 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 INTS4P2-202ENST00000614726 2019 ntBASIC12.56□□□□□ -0.4
COL6A5A8TX70 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
COL6A5A8TX70 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC12.56□□□□□ -0.4
COL6A5A8TX70 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms