Protein–RNA interactions for Protein: Q9P1Y6

PHRF1, PHD and RING finger domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 1,649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1Q9P1Y6 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 FAM21FP-201ENST00000426241 1131 ntBASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 TDH-203ENST00000531764 1110 ntBASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 KRT90P-201ENST00000549264 1064 ntBASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 PAM16-215ENST00000577031 548 ntTSL 4 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AC243960.2-201ENST00000600996 747 ntBASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 AL022328.1-201ENST00000610050 478 ntBASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PHRF1Q9P1Y6 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 AL645608.8-201ENST00000606034 2086 ntBASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 TP73-213ENST00000604479 1623 ntTSL 5 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 KRT8P22-201ENST00000562317 1415 ntBASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 AC139713.2-201ENST00000641328 2723 ntBASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 PKIG-203ENST00000372887 769 ntTSL 3 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 RPL7P3-201ENST00000441388 714 ntBASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 BTNL10-201ENST00000595971 695 ntBASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PHRF1Q9P1Y6 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PHRF1Q9P1Y6 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PHRF1Q9P1Y6 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 FO681548.1-201ENST00000455617 1132 ntBASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 HNRNPA1P13-201ENST00000510646 963 ntBASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 AC244669.2-201ENST00000612320 853 ntBASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 U82695.1-201ENST00000635752 1889 ntBASIC21.64■■□□□ 1.05
PHRF1Q9P1Y6 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 TARDBPP1-201ENST00000442013 1203 ntBASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
PHRF1Q9P1Y6 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PHRF1Q9P1Y6 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
PHRF1Q9P1Y6 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
PHRF1Q9P1Y6 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PHRF1Q9P1Y6 SOCS2P1-201ENST00000417727 557 ntBASIC21.62■■□□□ 1.05
PHRF1Q9P1Y6 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PHRF1Q9P1Y6 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms