Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Gm13722-201ENSMUST00000117964 3066 ntBASIC11.15□□□□□ -0.62
Sdc1P18828 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Gm37472-201ENSMUST00000192342 4052 ntBASIC11.15□□□□□ -0.62
Sdc1P18828 Gm19817-201ENSMUST00000199764 2132 ntBASIC11.15□□□□□ -0.62
Sdc1P18828 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Sdc1P18828 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sdc1P18828 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sdc1P18828 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC11.15□□□□□ -0.63
Sdc1P18828 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC11.15□□□□□ -0.63
Sdc1P18828 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sdc1P18828 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.63
Sdc1P18828 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
Sdc1P18828 CT025624.1-201ENSMUST00000224007 2700 ntBASIC11.15□□□□□ -0.63
Sdc1P18828 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Sdc1P18828 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC11.14□□□□□ -0.63
Sdc1P18828 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC11.14□□□□□ -0.63
Sdc1P18828 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC11.14□□□□□ -0.63
Sdc1P18828 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Sdc1P18828 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC11.14□□□□□ -0.63
Sdc1P18828 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC11.14□□□□□ -0.63
Sdc1P18828 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
Sdc1P18828 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Gm45751-201ENSMUST00000210185 1573 ntBASIC11.14□□□□□ -0.63
Sdc1P18828 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 AC151895.1-201ENSMUST00000219025 1742 ntBASIC11.14□□□□□ -0.63
Sdc1P18828 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC11.14□□□□□ -0.63
Sdc1P18828 Gm44851-201ENSMUST00000205735 2309 ntBASIC11.14□□□□□ -0.63
Sdc1P18828 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Sdc1P18828 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC11.14□□□□□ -0.63
Sdc1P18828 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Sdc1P18828 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Gm3928-201ENSMUST00000121141 1307 ntBASIC11.13□□□□□ -0.63
Sdc1P18828 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Sdc1P18828 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Sdc1P18828 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Sdc1P18828 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Sdc1P18828 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Sdc1P18828 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Sdc1P18828 Gm6433-201ENSMUST00000118634 875 ntBASIC11.13□□□□□ -0.63
Sdc1P18828 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC11.13□□□□□ -0.63
Sdc1P18828 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC11.13□□□□□ -0.63
Sdc1P18828 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC11.13□□□□□ -0.63
Sdc1P18828 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
Sdc1P18828 Gm4535-201ENSMUST00000182274 558 ntBASIC11.13□□□□□ -0.63
Sdc1P18828 AC153889.1-201ENSMUST00000219257 330 ntBASIC11.13□□□□□ -0.63
Sdc1P18828 AC154757.1-201ENSMUST00000228289 336 ntBASIC11.13□□□□□ -0.63
Sdc1P18828 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Sdc1P18828 Gm10355-201ENSMUST00000097146 517 ntBASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms