Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 AC005915.1-201ENST00000624912 2018 ntBASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP4AQ9BY43 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 AC142381.1-201ENST00000426099 345 ntBASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 RBPMS2P1-201ENST00000437762 623 ntBASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 CNN2P2-201ENST00000443536 909 ntBASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 CNN2P3-201ENST00000450201 906 ntBASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 SPTSSB-204ENST00000617024 1292 ntBASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 AL136317.3-201ENST00000618497 906 ntBASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
CHMP4AQ9BY43 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 FAM220BP-201ENST00000377689 816 ntBASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 FAM58DP-201ENST00000428076 619 ntBASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 ALG1L8P-201ENST00000533887 760 ntBASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 SLC25A39P2-201ENST00000537614 270 ntBASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 AL138918.1-201ENST00000568306 659 ntBASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 FHL2-212ENST00000607522 759 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP4AQ9BY43 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4AQ9BY43 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4AQ9BY43 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4AQ9BY43 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
CHMP4AQ9BY43 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4AQ9BY43 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC21.14■□□□□ 0.98
CHMP4AQ9BY43 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CHMP4AQ9BY43 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP4AQ9BY43 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.97
CHMP4AQ9BY43 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CHMP4AQ9BY43 AL139400.1-201ENST00000366220 510 ntBASIC21.14■□□□□ 0.97
CHMP4AQ9BY43 HLA-H-201ENST00000383620 1096 ntBASIC21.14■□□□□ 0.97
CHMP4AQ9BY43 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC21.14■□□□□ 0.97
CHMP4AQ9BY43 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.14■□□□□ 0.97
CHMP4AQ9BY43 AC069262.1-201ENST00000539058 672 ntBASIC21.14■□□□□ 0.97
CHMP4AQ9BY43 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC21.14■□□□□ 0.97
CHMP4AQ9BY43 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms