Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC006033.1-201ENST00000440505 426 ntBASIC17.34■□□□□ 0.37
CHD9Q3L8U1 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 AC006538.1-201ENST00000567905 1585 ntBASIC17.34■□□□□ 0.37
CHD9Q3L8U1 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 AC093724.1-201ENST00000448659 1027 ntBASIC17.34■□□□□ 0.37
CHD9Q3L8U1 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 AC074044.1-201ENST00000609673 707 ntBASIC17.34■□□□□ 0.37
CHD9Q3L8U1 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.34■□□□□ 0.37
CHD9Q3L8U1 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.33■□□□□ 0.37
CHD9Q3L8U1 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHD9Q3L8U1 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.33■□□□□ 0.37
CHD9Q3L8U1 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHD9Q3L8U1 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHD9Q3L8U1 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 RN7SL399P-201ENST00000471648 279 ntBASIC17.33■□□□□ 0.36
CHD9Q3L8U1 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 ACTG1P17-201ENST00000558391 1119 ntBASIC17.33■□□□□ 0.36
CHD9Q3L8U1 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.33■□□□□ 0.36
CHD9Q3L8U1 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHD9Q3L8U1 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 GNRHR2-203ENST00000581100 1187 ntBASIC17.32■□□□□ 0.36
CHD9Q3L8U1 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 AC005702.4-201ENST00000618393 416 ntBASIC17.32■□□□□ 0.36
CHD9Q3L8U1 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHD9Q3L8U1 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 ACTG1P3-201ENST00000431775 1114 ntBASIC17.31■□□□□ 0.36
CHD9Q3L8U1 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.31■□□□□ 0.36
CHD9Q3L8U1 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms