Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 RPF1-202ENST00000370656 724 ntTSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 AC092933.1-201ENST00000393644 945 ntBASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 AL603756.1-201ENST00000606511 2163 ntBASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 HAUS4P1-201ENST00000406739 1145 ntBASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 AL139010.1-201ENST00000454878 894 ntBASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 AP002490.2-201ENST00000524791 560 ntBASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 MIR6069-201ENST00000620069 79 ntBASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 RETN-203ENST00000629642 400 ntTSL 5 BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHANK3Q9BYB0 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 CDC14C-201ENST00000428251 1719 ntBASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
SHANK3Q9BYB0 PCGF3-213ENST00000620529 1899 ntBASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 FADS2-205ENST00000517839 469 ntTSL 3 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 RARRES2P5-201ENST00000564013 466 ntBASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 AC068880.1-201ENST00000507289 2297 ntBASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms