Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AC022188.1-201ENST00000620960 1664 ntBASIC13.57□□□□□ -0.24
FOXA2Q9Y261 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 ALOX12P2-203ENST00000570921 1945 ntBASIC13.57□□□□□ -0.24
FOXA2Q9Y261 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 MED22-202ENST00000371999 987 ntTSL 3 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AL662844.1-201ENST00000546340 181 ntBASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 SDCCAG3P1-201ENST00000589292 1150 ntBASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AC006557.2-201ENST00000592985 1240 ntBASIC13.57□□□□□ -0.24
FOXA2Q9Y261 TERC-201ENST00000602385 541 ntBASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AC025062.2-201ENST00000605477 670 ntBASIC13.57□□□□□ -0.24
FOXA2Q9Y261 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 ACE-204ENST00000428043 5120 ntTSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AC243591.1-201ENST00000452967 1364 ntBASIC13.57□□□□□ -0.24
FOXA2Q9Y261 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 AC006277.1-201ENST00000624348 1610 ntBASIC13.57□□□□□ -0.24
FOXA2Q9Y261 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
FOXA2Q9Y261 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 MOK-208ENST00000519058 917 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 OR7E14P-202ENST00000530490 1290 ntBASIC13.56□□□□□ -0.24
FOXA2Q9Y261 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 AC104692.2-201ENST00000603054 253 ntBASIC13.56□□□□□ -0.24
FOXA2Q9Y261 AL773604.1-201ENST00000617417 272 ntBASIC13.56□□□□□ -0.24
FOXA2Q9Y261 ABBA01031661.1-201ENST00000634362 1253 ntBASIC13.56□□□□□ -0.24
FOXA2Q9Y261 AC107918.4-202ENST00000641623 219 ntBASIC13.56□□□□□ -0.24
FOXA2Q9Y261 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 AL590787.1-201ENST00000568856 1315 ntBASIC13.56□□□□□ -0.24
FOXA2Q9Y261 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA2Q9Y261 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA2Q9Y261 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms