Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
CDX2Q99626 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.21■□□□□ 0.35
CDX2Q99626 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX2Q99626 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.21■□□□□ 0.35
CDX2Q99626 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.21■□□□□ 0.35
CDX2Q99626 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CDX2Q99626 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
CDX2Q99626 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC17.21■□□□□ 0.35
CDX2Q99626 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC17.21■□□□□ 0.35
CDX2Q99626 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
CDX2Q99626 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX2Q99626 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX2Q99626 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.21■□□□□ 0.35
CDX2Q99626 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX2Q99626 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDX2Q99626 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.21■□□□□ 0.34
CDX2Q99626 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.34
CDX2Q99626 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
CDX2Q99626 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.2■□□□□ 0.34
CDX2Q99626 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.2■□□□□ 0.34
CDX2Q99626 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.2■□□□□ 0.34
CDX2Q99626 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
CDX2Q99626 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 LBH-202ENST00000401506 485 ntTSL 3 BASIC17.2■□□□□ 0.34
CDX2Q99626 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.2■□□□□ 0.34
CDX2Q99626 AC007969.1-201ENST00000433675 447 ntBASIC17.2■□□□□ 0.34
CDX2Q99626 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CDX2Q99626 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.2■□□□□ 0.34
CDX2Q99626 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.2■□□□□ 0.34
CDX2Q99626 Z93015.1-201ENST00000451718 390 ntBASIC17.2■□□□□ 0.34
CDX2Q99626 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC17.2■□□□□ 0.34
CDX2Q99626 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC17.2■□□□□ 0.34
CDX2Q99626 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CDX2Q99626 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.2■□□□□ 0.34
CDX2Q99626 AC061975.2-201ENST00000581722 295 ntBASIC17.2■□□□□ 0.34
CDX2Q99626 AC020914.3-201ENST00000594712 304 ntBASIC17.2■□□□□ 0.34
CDX2Q99626 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDX2Q99626 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX2Q99626 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CDX2Q99626 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 AL021920.2-201ENST00000624828 1351 ntBASIC17.19■□□□□ 0.34
CDX2Q99626 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX2Q99626 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.19■□□□□ 0.34
CDX2Q99626 AL355334.1-201ENST00000417713 215 ntBASIC17.19■□□□□ 0.34
CDX2Q99626 AC004898.1-201ENST00000451057 766 ntBASIC17.19■□□□□ 0.34
CDX2Q99626 AL591846.1-201ENST00000451736 433 ntBASIC17.19■□□□□ 0.34
CDX2Q99626 AC091804.1-201ENST00000486888 567 ntBASIC17.19■□□□□ 0.34
CDX2Q99626 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.19■□□□□ 0.34
CDX2Q99626 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDX2Q99626 KRT90P-201ENST00000549264 1064 ntBASIC17.19■□□□□ 0.34
CDX2Q99626 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 MIR3619-201ENST00000579667 83 ntBASIC17.19■□□□□ 0.34
CDX2Q99626 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.19■□□□□ 0.34
CDX2Q99626 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX2Q99626 KLK3-211ENST00000597483 810 ntTSL 2 BASIC17.19■□□□□ 0.34
CDX2Q99626 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX2Q99626 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 AL391069.4-201ENST00000609583 481 ntBASIC17.19■□□□□ 0.34
CDX2Q99626 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.19■□□□□ 0.34
CDX2Q99626 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.19■□□□□ 0.34
CDX2Q99626 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDX2Q99626 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms