Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 AC034105.1-201ENST00000563488 319 ntBASIC17.3■□□□□ 0.36
USP29Q9HBJ7 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 AC140113.2-201ENST00000604370 208 ntBASIC17.3■□□□□ 0.36
USP29Q9HBJ7 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 PGM5P2-202ENST00000637225 1043 ntBASIC17.3■□□□□ 0.36
USP29Q9HBJ7 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP29Q9HBJ7 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 AC092364.2-201ENST00000596710 2692 ntBASIC17.29■□□□□ 0.36
USP29Q9HBJ7 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 ELK2BP-201ENST00000415014 1224 ntBASIC17.29■□□□□ 0.36
USP29Q9HBJ7 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 KRT18P27-201ENST00000427733 1299 ntBASIC17.29■□□□□ 0.36
USP29Q9HBJ7 SLC25A6P2-201ENST00000497974 877 ntBASIC17.29■□□□□ 0.36
USP29Q9HBJ7 RNA5SP415-201ENST00000517246 115 ntBASIC17.29■□□□□ 0.36
USP29Q9HBJ7 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 AL805961.1-202ENST00000641562 540 ntBASIC17.29■□□□□ 0.36
USP29Q9HBJ7 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
USP29Q9HBJ7 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 MST1L-201ENST00000442552 2185 ntBASIC17.28■□□□□ 0.36
USP29Q9HBJ7 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 PI4KAP1-204ENST00000612579 1703 ntBASIC17.28■□□□□ 0.36
USP29Q9HBJ7 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 AC073621.1-201ENST00000392730 636 ntBASIC17.28■□□□□ 0.36
USP29Q9HBJ7 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 DNAJB3-201ENST00000446806 729 ntBASIC17.28■□□□□ 0.36
USP29Q9HBJ7 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 AC040169.1-201ENST00000565382 521 ntBASIC17.28■□□□□ 0.36
USP29Q9HBJ7 MPDU1-223ENST00000582151 728 ntBASIC17.28■□□□□ 0.36
USP29Q9HBJ7 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms