Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
MSH5O43196 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
MSH5O43196 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
MSH5O43196 LBH-204ENST00000406087 559 ntTSL 4 BASIC23.33■■□□□ 1.33
MSH5O43196 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC23.33■■□□□ 1.33
MSH5O43196 HGF-207ENST00000453018 721 ntTSL 3 BASIC23.33■■□□□ 1.33
MSH5O43196 RNA5SP415-201ENST00000517246 115 ntBASIC23.33■■□□□ 1.33
MSH5O43196 RERG-205ENST00000537647 935 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC23.33■■□□□ 1.33
MSH5O43196 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 AC027013.1-201ENST00000554412 1057 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC23.33■■□□□ 1.33
MSH5O43196 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC23.33■■□□□ 1.33
MSH5O43196 HERC2P5-202ENST00000564458 1164 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 HERC2P8-203ENST00000564795 1164 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC23.33■■□□□ 1.33
MSH5O43196 AC010735.1-201ENST00000567305 1026 ntBASIC23.33■■□□□ 1.33
MSH5O43196 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH5O43196 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
MSH5O43196 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC23.33■■□□□ 1.32
MSH5O43196 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.32
MSH5O43196 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
MSH5O43196 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
MSH5O43196 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC23.33■■□□□ 1.32
MSH5O43196 SLC10A5P1-201ENST00000379063 1306 ntBASIC23.33■■□□□ 1.32
MSH5O43196 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC23.32■■□□□ 1.32
MSH5O43196 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
MSH5O43196 AL356309.3-201ENST00000624132 1934 ntBASIC23.32■■□□□ 1.32
MSH5O43196 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 C4orf22-201ENST00000358105 895 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC23.32■■□□□ 1.32
MSH5O43196 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC23.32■■□□□ 1.32
MSH5O43196 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
MSH5O43196 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 COX7A2L-204ENST00000463055 540 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
MSH5O43196 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC23.32■■□□□ 1.32
MSH5O43196 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC23.32■■□□□ 1.32
MSH5O43196 PAM16-208ENST00000573553 722 ntTSL 2 BASIC23.32■■□□□ 1.32
MSH5O43196 AC092354.2-201ENST00000607786 514 ntBASIC23.32■■□□□ 1.32
MSH5O43196 Z83851.2-201ENST00000609564 659 ntBASIC23.32■■□□□ 1.32
MSH5O43196 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC23.32■■□□□ 1.32
MSH5O43196 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
MSH5O43196 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH5O43196 FLJ38576-201ENST00000623820 2459 ntBASIC23.32■■□□□ 1.32
MSH5O43196 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
MSH5O43196 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 KRT8P32-201ENST00000512863 1461 ntBASIC23.31■■□□□ 1.32
MSH5O43196 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC23.31■■□□□ 1.32
MSH5O43196 RBM5-AS1-201ENST00000630404 1386 ntBASIC23.31■■□□□ 1.32
MSH5O43196 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
MSH5O43196 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
MSH5O43196 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC23.31■■□□□ 1.32
MSH5O43196 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 LBH-203ENST00000404397 543 ntTSL 4 BASIC23.31■■□□□ 1.32
MSH5O43196 IMP4-203ENST00000409935 958 ntTSL 5 BASIC23.31■■□□□ 1.32
MSH5O43196 AL606490.5-201ENST00000413071 760 ntBASIC23.31■■□□□ 1.32
MSH5O43196 APCDD1L-AS1-204ENST00000427794 461 ntTSL 3 BASIC23.31■■□□□ 1.32
MSH5O43196 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
MSH5O43196 OR7E14P-202ENST00000530490 1290 ntBASIC23.31■■□□□ 1.32
MSH5O43196 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC23.31■■□□□ 1.32
MSH5O43196 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC23.31■■□□□ 1.32
MSH5O43196 AC040169.1-201ENST00000565382 521 ntBASIC23.31■■□□□ 1.32
MSH5O43196 AC079414.2-201ENST00000567157 1104 ntBASIC23.31■■□□□ 1.32
MSH5O43196 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 GZMM-202ENST00000592501 941 ntTSL 3 BASIC23.31■■□□□ 1.32
MSH5O43196 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC23.31■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms