Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC055876.2-201ENST00000531834 546 ntBASIC17.63■□□□□ 0.41
CHD9Q3L8U1 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 FLJ13224-201ENST00000313737 1514 ntBASIC17.63■□□□□ 0.41
CHD9Q3L8U1 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.63■□□□□ 0.41
CHD9Q3L8U1 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 WFDC1-204ENST00000613603 549 ntBASIC17.62■□□□□ 0.41
CHD9Q3L8U1 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC093525.8-201ENST00000624099 1342 ntBASIC17.62■□□□□ 0.41
CHD9Q3L8U1 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 SLC25A1P3-201ENST00000395415 828 ntBASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AL589987.1-201ENST00000453380 819 ntBASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC133552.6-201ENST00000613406 534 ntBASIC17.62■□□□□ 0.41
CHD9Q3L8U1 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 KRT8P12-202ENST00000472924 1397 ntBASIC17.62■□□□□ 0.41
CHD9Q3L8U1 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AC093726.1-201ENST00000608064 963 ntBASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.62■□□□□ 0.41
CHD9Q3L8U1 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 RNA5SP412-201ENST00000516234 123 ntBASIC17.61■□□□□ 0.41
CHD9Q3L8U1 AC010319.3-201ENST00000597028 470 ntBASIC17.61■□□□□ 0.41
CHD9Q3L8U1 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHD9Q3L8U1 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.6■□□□□ 0.41
CHD9Q3L8U1 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms