Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.05■□□□□ 0.16
COL5A1P20908 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.05■□□□□ 0.16
COL5A1P20908 GIMAP3P-201ENST00000495150 836 ntBASIC16.05■□□□□ 0.16
COL5A1P20908 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.05■□□□□ 0.16
COL5A1P20908 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.05■□□□□ 0.16
COL5A1P20908 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL5A1P20908 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL5A1P20908 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL5A1P20908 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL5A1P20908 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL5A1P20908 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL5A1P20908 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL5A1P20908 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL5A1P20908 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL5A1P20908 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.04■□□□□ 0.16
COL5A1P20908 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL5A1P20908 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.04■□□□□ 0.16
COL5A1P20908 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.04■□□□□ 0.16
COL5A1P20908 GPR53P-205ENST00000457298 1084 ntBASIC16.04■□□□□ 0.16
COL5A1P20908 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.04■□□□□ 0.16
COL5A1P20908 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.04■□□□□ 0.16
COL5A1P20908 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.04■□□□□ 0.16
COL5A1P20908 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL5A1P20908 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL5A1P20908 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.04■□□□□ 0.16
COL5A1P20908 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL5A1P20908 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.04■□□□□ 0.16
COL5A1P20908 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.03■□□□□ 0.16
COL5A1P20908 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL5A1P20908 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.03■□□□□ 0.16
COL5A1P20908 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
COL5A1P20908 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.03■□□□□ 0.16
COL5A1P20908 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL5A1P20908 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.03■□□□□ 0.16
COL5A1P20908 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.03■□□□□ 0.16
COL5A1P20908 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.03■□□□□ 0.16
COL5A1P20908 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.03■□□□□ 0.16
COL5A1P20908 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.03■□□□□ 0.16
COL5A1P20908 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 AC073439.1-201ENST00000624121 1774 ntBASIC16.03■□□□□ 0.16
COL5A1P20908 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.03■□□□□ 0.16
COL5A1P20908 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.03■□□□□ 0.16
COL5A1P20908 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.03■□□□□ 0.16
COL5A1P20908 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 AC079776.1-201ENST00000401540 1152 ntBASIC16.03■□□□□ 0.16
COL5A1P20908 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.03■□□□□ 0.16
COL5A1P20908 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 AC009407.1-201ENST00000568958 598 ntBASIC16.03■□□□□ 0.16
COL5A1P20908 RN7SL828P-201ENST00000607615 303 ntBASIC16.03■□□□□ 0.16
COL5A1P20908 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.03■□□□□ 0.16
COL5A1P20908 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL5A1P20908 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
COL5A1P20908 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COL5A1P20908 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COL5A1P20908 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
COL5A1P20908 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.02■□□□□ 0.16
COL5A1P20908 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
COL5A1P20908 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
COL5A1P20908 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
COL5A1P20908 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.02■□□□□ 0.16
COL5A1P20908 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 MTND6P24-201ENST00000440466 518 ntBASIC16.02■□□□□ 0.16
COL5A1P20908 AC104794.3-201ENST00000566840 1248 ntBASIC16.02■□□□□ 0.16
COL5A1P20908 MPDU1-223ENST00000582151 728 ntBASIC16.02■□□□□ 0.16
COL5A1P20908 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.02■□□□□ 0.16
COL5A1P20908 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.02■□□□□ 0.16
COL5A1P20908 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL5A1P20908 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL5A1P20908 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL5A1P20908 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL5A1P20908 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.02■□□□□ 0.15
COL5A1P20908 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
COL5A1P20908 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL5A1P20908 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms