Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
Vps53Q8CCB4 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Vps53Q8CCB4 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Vps53Q8CCB4 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Vps53Q8CCB4 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
Vps53Q8CCB4 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC25.16■■□□□ 1.62
Vps53Q8CCB4 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
Vps53Q8CCB4 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Vps53Q8CCB4 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC25.15■■□□□ 1.62
Vps53Q8CCB4 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC25.15■■□□□ 1.62
Vps53Q8CCB4 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
Vps53Q8CCB4 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Vps53Q8CCB4 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Vps53Q8CCB4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Vps53Q8CCB4 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
Vps53Q8CCB4 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Vps53Q8CCB4 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
Vps53Q8CCB4 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
Vps53Q8CCB4 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Vps53Q8CCB4 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Vps53Q8CCB4 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC25.13■■□□□ 1.61
Vps53Q8CCB4 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
Vps53Q8CCB4 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
Vps53Q8CCB4 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
Vps53Q8CCB4 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Vps53Q8CCB4 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Vps53Q8CCB4 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Vps53Q8CCB4 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Vps53Q8CCB4 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Vps53Q8CCB4 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Vps53Q8CCB4 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
Vps53Q8CCB4 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
Vps53Q8CCB4 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Vps53Q8CCB4 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
Vps53Q8CCB4 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC25.1■■□□□ 1.61
Vps53Q8CCB4 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Vps53Q8CCB4 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Vps53Q8CCB4 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Vps53Q8CCB4 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Vps53Q8CCB4 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Vps53Q8CCB4 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Vps53Q8CCB4 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC25.09■■□□□ 1.61
Vps53Q8CCB4 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Vps53Q8CCB4 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Vps53Q8CCB4 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Vps53Q8CCB4 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC25.09■■□□□ 1.61
Vps53Q8CCB4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Vps53Q8CCB4 Gm6934-201ENSMUST00000194780 1905 ntBASIC25.08■■□□□ 1.61
Vps53Q8CCB4 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC25.08■■□□□ 1.61
Vps53Q8CCB4 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
Vps53Q8CCB4 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Vps53Q8CCB4 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Vps53Q8CCB4 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
Vps53Q8CCB4 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Vps53Q8CCB4 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Vps53Q8CCB4 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC25.07■■□□□ 1.6
Vps53Q8CCB4 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Vps53Q8CCB4 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Vps53Q8CCB4 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC25.06■■□□□ 1.6
Vps53Q8CCB4 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Vps53Q8CCB4 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC25.05■■□□□ 1.6
Vps53Q8CCB4 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Vps53Q8CCB4 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC25.05■■□□□ 1.6
Vps53Q8CCB4 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Vps53Q8CCB4 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC25.04■■□□□ 1.6
Vps53Q8CCB4 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
Vps53Q8CCB4 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Vps53Q8CCB4 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
Vps53Q8CCB4 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC25.03■■□□□ 1.6
Vps53Q8CCB4 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC25.03■■□□□ 1.6
Vps53Q8CCB4 Gm43592-201ENSMUST00000196922 1165 ntBASIC25.03■■□□□ 1.6
Vps53Q8CCB4 AC093043.1-201ENSMUST00000226700 898 ntBASIC25.03■■□□□ 1.6
Vps53Q8CCB4 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Vps53Q8CCB4 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC25.03■■□□□ 1.6
Vps53Q8CCB4 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Vps53Q8CCB4 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Vps53Q8CCB4 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Vps53Q8CCB4 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Vps53Q8CCB4 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Vps53Q8CCB4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Vps53Q8CCB4 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
Vps53Q8CCB4 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC25■■□□□ 1.59
Vps53Q8CCB4 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC25■■□□□ 1.59
Vps53Q8CCB4 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC25■■□□□ 1.59
Vps53Q8CCB4 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Vps53Q8CCB4 Gm43566-201ENSMUST00000196851 808 ntBASIC25■■□□□ 1.59
Vps53Q8CCB4 Nsd1-203ENSMUST00000224156 1149 ntBASIC25■■□□□ 1.59
Vps53Q8CCB4 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
Vps53Q8CCB4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
Vps53Q8CCB4 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC25■■□□□ 1.59
Vps53Q8CCB4 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC25■■□□□ 1.59
Vps53Q8CCB4 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
Vps53Q8CCB4 Gm7199-201ENSMUST00000118327 1485 ntBASIC24.99■■□□□ 1.59
Vps53Q8CCB4 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
Vps53Q8CCB4 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC24.99■■□□□ 1.59
Vps53Q8CCB4 Gm15820-201ENSMUST00000201566 728 ntBASIC24.99■■□□□ 1.59
Vps53Q8CCB4 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Vps53Q8CCB4 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Vps53Q8CCB4 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Vps53Q8CCB4 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC24.98■■□□□ 1.59
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms