Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC19.26■□□□□ 0.67
Ube3dQ8BX13 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ube3dQ8BX13 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ube3dQ8BX13 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 Gm6934-201ENSMUST00000194780 1905 ntBASIC19.25■□□□□ 0.67
Ube3dQ8BX13 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ube3dQ8BX13 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ube3dQ8BX13 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Ube3dQ8BX13 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC19.24■□□□□ 0.67
Ube3dQ8BX13 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.24■□□□□ 0.67
Ube3dQ8BX13 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.24■□□□□ 0.67
Ube3dQ8BX13 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ube3dQ8BX13 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Gm10420-201ENSMUST00000121713 882 ntBASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ube3dQ8BX13 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Ube3dQ8BX13 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ube3dQ8BX13 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.22■□□□□ 0.67
Ube3dQ8BX13 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Ube3dQ8BX13 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ube3dQ8BX13 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ube3dQ8BX13 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.22■□□□□ 0.67
Ube3dQ8BX13 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ube3dQ8BX13 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ube3dQ8BX13 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC19.21■□□□□ 0.67
Ube3dQ8BX13 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.21■□□□□ 0.67
Ube3dQ8BX13 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
Ube3dQ8BX13 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ube3dQ8BX13 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ube3dQ8BX13 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ube3dQ8BX13 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ube3dQ8BX13 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ube3dQ8BX13 Gm26766-202ENSMUST00000227544 2347 ntBASIC19.2■□□□□ 0.66
Ube3dQ8BX13 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ube3dQ8BX13 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ube3dQ8BX13 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.19■□□□□ 0.66
Ube3dQ8BX13 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Ube3dQ8BX13 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ube3dQ8BX13 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.19■□□□□ 0.66
Ube3dQ8BX13 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Ube3dQ8BX13 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ube3dQ8BX13 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ube3dQ8BX13 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ube3dQ8BX13 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ube3dQ8BX13 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ube3dQ8BX13 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Ube3dQ8BX13 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Ube3dQ8BX13 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ube3dQ8BX13 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ube3dQ8BX13 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ube3dQ8BX13 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ube3dQ8BX13 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ube3dQ8BX13 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Ube3dQ8BX13 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ube3dQ8BX13 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Ube3dQ8BX13 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3dQ8BX13 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC19.16■□□□□ 0.66
Ube3dQ8BX13 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3dQ8BX13 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC19.16■□□□□ 0.66
Ube3dQ8BX13 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ube3dQ8BX13 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC19.16■□□□□ 0.66
Ube3dQ8BX13 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Ube3dQ8BX13 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3dQ8BX13 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.15■□□□□ 0.66
Ube3dQ8BX13 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC19.15■□□□□ 0.66
Ube3dQ8BX13 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Ube3dQ8BX13 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ube3dQ8BX13 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3dQ8BX13 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3dQ8BX13 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3dQ8BX13 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3dQ8BX13 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3dQ8BX13 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Ube3dQ8BX13 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC19.14■□□□□ 0.65
Ube3dQ8BX13 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ube3dQ8BX13 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Ube3dQ8BX13 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3dQ8BX13 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.13■□□□□ 0.65
Ube3dQ8BX13 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3dQ8BX13 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3dQ8BX13 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ube3dQ8BX13 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.12■□□□□ 0.65
Ube3dQ8BX13 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ube3dQ8BX13 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ube3dQ8BX13 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms