Protein–RNA interactions for Protein: Q2QI47

Ush2A, Usherin, mousemouse

Predictions only

Length 5,193 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ush2AQ2QI47 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ush2AQ2QI47 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ush2AQ2QI47 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC12.29□□□□□ -0.44
Ush2AQ2QI47 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ush2AQ2QI47 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC12.29□□□□□ -0.44
Ush2AQ2QI47 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Ush2AQ2QI47 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC12.29□□□□□ -0.44
Ush2AQ2QI47 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Ush2AQ2QI47 Gm43017-201ENSMUST00000198296 752 ntBASIC12.29□□□□□ -0.44
Ush2AQ2QI47 Gm42569-201ENSMUST00000200539 472 ntBASIC12.29□□□□□ -0.44
Ush2AQ2QI47 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ush2AQ2QI47 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ush2AQ2QI47 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC12.28□□□□□ -0.44
Ush2AQ2QI47 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC12.28□□□□□ -0.44
Ush2AQ2QI47 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ush2AQ2QI47 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ush2AQ2QI47 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ush2AQ2QI47 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Ush2AQ2QI47 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC12.27□□□□□ -0.44
Ush2AQ2QI47 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Ush2AQ2QI47 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ush2AQ2QI47 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ush2AQ2QI47 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ush2AQ2QI47 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ush2AQ2QI47 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ush2AQ2QI47 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ush2AQ2QI47 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ush2AQ2QI47 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ush2AQ2QI47 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ush2AQ2QI47 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ush2AQ2QI47 AC117769.4-201ENSMUST00000225679 685 ntBASIC12.25□□□□□ -0.45
Ush2AQ2QI47 Gm43445-201ENSMUST00000198564 2091 ntBASIC12.25□□□□□ -0.45
Ush2AQ2QI47 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Ush2AQ2QI47 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC12.25□□□□□ -0.45
Ush2AQ2QI47 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ush2AQ2QI47 Gm6658-202ENSMUST00000209493 1885 ntBASIC12.25□□□□□ -0.45
Ush2AQ2QI47 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ush2AQ2QI47 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Ush2AQ2QI47 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ush2AQ2QI47 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ush2AQ2QI47 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC12.24□□□□□ -0.45
Ush2AQ2QI47 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ush2AQ2QI47 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Ush2AQ2QI47 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Ush2AQ2QI47 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ush2AQ2QI47 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Ush2AQ2QI47 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Ush2AQ2QI47 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Gm14121-201ENSMUST00000121441 1380 ntBASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC12.23□□□□□ -0.45
Ush2AQ2QI47 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ush2AQ2QI47 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ush2AQ2QI47 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Ush2AQ2QI47 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Ush2AQ2QI47 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Ush2AQ2QI47 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ush2AQ2QI47 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC12.21□□□□□ -0.46
Ush2AQ2QI47 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Ush2AQ2QI47 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC12.21□□□□□ -0.46
Ush2AQ2QI47 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC12.21□□□□□ -0.46
Ush2AQ2QI47 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC12.21□□□□□ -0.46
Ush2AQ2QI47 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC12.21□□□□□ -0.46
Ush2AQ2QI47 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC12.2□□□□□ -0.46
Ush2AQ2QI47 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC12.2□□□□□ -0.46
Ush2AQ2QI47 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ush2AQ2QI47 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ush2AQ2QI47 AC158538.1-201ENSMUST00000225870 294 ntBASIC12.2□□□□□ -0.46
Ush2AQ2QI47 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ush2AQ2QI47 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ush2AQ2QI47 Gm10252-201ENSMUST00000209541 832 ntBASIC12.19□□□□□ -0.46
Ush2AQ2QI47 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ush2AQ2QI47 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ush2AQ2QI47 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Ush2AQ2QI47 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC12.19□□□□□ -0.46
Ush2AQ2QI47 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ush2AQ2QI47 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms