Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lmx1bO88609 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lmx1bO88609 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lmx1bO88609 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lmx1bO88609 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Lmx1bO88609 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC19.67■□□□□ 0.74
Lmx1bO88609 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lmx1bO88609 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lmx1bO88609 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
Lmx1bO88609 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lmx1bO88609 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Lmx1bO88609 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lmx1bO88609 Gm15820-201ENSMUST00000201566 728 ntBASIC19.66■□□□□ 0.74
Lmx1bO88609 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lmx1bO88609 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lmx1bO88609 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lmx1bO88609 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1bO88609 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1bO88609 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
Lmx1bO88609 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.65■□□□□ 0.74
Lmx1bO88609 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1bO88609 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Lmx1bO88609 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1bO88609 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1bO88609 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1bO88609 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC19.65■□□□□ 0.74
Lmx1bO88609 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
Lmx1bO88609 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Lmx1bO88609 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Lmx1bO88609 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.64■□□□□ 0.73
Lmx1bO88609 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lmx1bO88609 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lmx1bO88609 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC19.64■□□□□ 0.73
Lmx1bO88609 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.64■□□□□ 0.73
Lmx1bO88609 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lmx1bO88609 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lmx1bO88609 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lmx1bO88609 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.63■□□□□ 0.73
Lmx1bO88609 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC19.63■□□□□ 0.73
Lmx1bO88609 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lmx1bO88609 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lmx1bO88609 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1bO88609 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Lmx1bO88609 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1bO88609 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1bO88609 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1bO88609 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
Lmx1bO88609 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Lmx1bO88609 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Lmx1bO88609 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Lmx1bO88609 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lmx1bO88609 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Lmx1bO88609 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1bO88609 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1bO88609 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.6■□□□□ 0.73
Lmx1bO88609 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1bO88609 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1bO88609 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1bO88609 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1bO88609 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Lmx1bO88609 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC19.6■□□□□ 0.73
Lmx1bO88609 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Lmx1bO88609 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Lmx1bO88609 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lmx1bO88609 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lmx1bO88609 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.59■□□□□ 0.73
Lmx1bO88609 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lmx1bO88609 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lmx1bO88609 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Lmx1bO88609 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lmx1bO88609 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lmx1bO88609 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lmx1bO88609 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lmx1bO88609 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lmx1bO88609 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lmx1bO88609 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC19.58■□□□□ 0.73
Lmx1bO88609 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC19.58■□□□□ 0.73
Lmx1bO88609 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lmx1bO88609 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Lmx1bO88609 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.58■□□□□ 0.72
Lmx1bO88609 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lmx1bO88609 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.57■□□□□ 0.72
Lmx1bO88609 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.57■□□□□ 0.72
Lmx1bO88609 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.57■□□□□ 0.72
Lmx1bO88609 Gm22567-201ENSMUST00000175542 342 ntBASIC19.57■□□□□ 0.72
Lmx1bO88609 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lmx1bO88609 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lmx1bO88609 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lmx1bO88609 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
Lmx1bO88609 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lmx1bO88609 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Lmx1bO88609 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lmx1bO88609 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lmx1bO88609 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Lmx1bO88609 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lmx1bO88609 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Lmx1bO88609 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.55■□□□□ 0.72
Lmx1bO88609 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lmx1bO88609 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lmx1bO88609 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.55■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms