Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chd6A3KFM7 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Chd6A3KFM7 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.35■□□□□ 0.53
Chd6A3KFM7 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.35■□□□□ 0.53
Chd6A3KFM7 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Chd6A3KFM7 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Chd6A3KFM7 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.35■□□□□ 0.53
Chd6A3KFM7 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Chd6A3KFM7 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chd6A3KFM7 Gm14121-201ENSMUST00000121441 1380 ntBASIC18.34■□□□□ 0.53
Chd6A3KFM7 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chd6A3KFM7 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.34■□□□□ 0.53
Chd6A3KFM7 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.34■□□□□ 0.53
Chd6A3KFM7 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chd6A3KFM7 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chd6A3KFM7 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Chd6A3KFM7 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Chd6A3KFM7 AC153504.1-201ENSMUST00000218379 2290 ntBASIC18.33■□□□□ 0.53
Chd6A3KFM7 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC18.33■□□□□ 0.53
Chd6A3KFM7 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chd6A3KFM7 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Chd6A3KFM7 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chd6A3KFM7 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Chd6A3KFM7 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chd6A3KFM7 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC18.32■□□□□ 0.52
Chd6A3KFM7 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chd6A3KFM7 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC18.32■□□□□ 0.52
Chd6A3KFM7 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.32■□□□□ 0.52
Chd6A3KFM7 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chd6A3KFM7 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chd6A3KFM7 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chd6A3KFM7 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Chd6A3KFM7 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Chd6A3KFM7 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC18.31■□□□□ 0.52
Chd6A3KFM7 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Chd6A3KFM7 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chd6A3KFM7 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chd6A3KFM7 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Chd6A3KFM7 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chd6A3KFM7 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Chd6A3KFM7 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Chd6A3KFM7 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd6A3KFM7 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd6A3KFM7 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd6A3KFM7 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd6A3KFM7 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Chd6A3KFM7 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Chd6A3KFM7 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.29■□□□□ 0.52
Chd6A3KFM7 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chd6A3KFM7 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chd6A3KFM7 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Chd6A3KFM7 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chd6A3KFM7 Gm26833-201ENSMUST00000180899 440 ntBASIC18.28■□□□□ 0.52
Chd6A3KFM7 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chd6A3KFM7 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chd6A3KFM7 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chd6A3KFM7 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chd6A3KFM7 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.28■□□□□ 0.52
Chd6A3KFM7 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Chd6A3KFM7 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Chd6A3KFM7 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.27■□□□□ 0.52
Chd6A3KFM7 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.27■□□□□ 0.51
Chd6A3KFM7 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
Chd6A3KFM7 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.26■□□□□ 0.51
Chd6A3KFM7 Gm37179-201ENSMUST00000194862 823 ntBASIC18.26■□□□□ 0.51
Chd6A3KFM7 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Chd6A3KFM7 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chd6A3KFM7 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Chd6A3KFM7 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chd6A3KFM7 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chd6A3KFM7 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
Chd6A3KFM7 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.24■□□□□ 0.51
Chd6A3KFM7 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.24■□□□□ 0.51
Chd6A3KFM7 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.24■□□□□ 0.51
Chd6A3KFM7 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd6A3KFM7 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Chd6A3KFM7 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Chd6A3KFM7 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd6A3KFM7 Gm43445-201ENSMUST00000198564 2091 ntBASIC18.24■□□□□ 0.51
Chd6A3KFM7 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chd6A3KFM7 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chd6A3KFM7 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.23■□□□□ 0.51
Chd6A3KFM7 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Chd6A3KFM7 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Chd6A3KFM7 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.22■□□□□ 0.51
Chd6A3KFM7 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.22■□□□□ 0.51
Chd6A3KFM7 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd6A3KFM7 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd6A3KFM7 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Chd6A3KFM7 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd6A3KFM7 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.21■□□□□ 0.51
Chd6A3KFM7 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Chd6A3KFM7 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Chd6A3KFM7 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd6A3KFM7 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Chd6A3KFM7 Zxda-201ENSMUST00000117281 2621 ntBASIC18.2■□□□□ 0.5
Chd6A3KFM7 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd6A3KFM7 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Chd6A3KFM7 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.2■□□□□ 0.5
Chd6A3KFM7 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms